Basic Information
Gene Structure
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Domain
| Database | EntryID | E-Value | Start | end | InterPro ID | Description |
|---|
Regulation&Interaction
Annotation
Orthologous Group
| Orthologous ID | Species Number | All hits in PereRegDB | Hits of this species | Orthologous Detail |
|---|
Expression Profile
| DataSet | Number of Samples expressed(TPM>1) | Mean | Min | Max | Standard deviation(SD) | Coeffcient variation(CV) |
|---|
Pathway
| GO Term | Description | GO Category |
|---|---|---|
| GO:0002020 | protease binding | MF |
| GO:0003674 | molecular_function | MF |
| GO:0005488 | binding | MF |
| GO:0005515 | protein binding | MF |
| GO:0005575 | cellular_component | CC |
| GO:0005576 | extracellular region | CC |
| GO:0005618 | cell wall | CC |
| GO:0005622 | intracellular anatomical structure | CC |
| GO:0005623 | obsolete cell | CC |
| GO:0005634 | nucleus | CC |
| GO:0005730 | nucleolus | CC |
| GO:0005737 | cytoplasm | CC |
| GO:0005773 | vacuole | CC |
| GO:0005774 | vacuolar membrane | CC |
| GO:0005794 | Golgi apparatus | CC |
| GO:0005829 | cytosol | CC |
| GO:0005840 | ribosome | CC |
| GO:0005886 | plasma membrane | CC |
| GO:0005911 | cell-cell junction | CC |
| GO:0006950 | response to stress | BP |
| GO:0006952 | defense response | BP |
| GO:0008150 | biological_process | BP |
| GO:0009266 | response to temperature stimulus | BP |
| GO:0009408 | response to heat | BP |
| GO:0009409 | response to cold | BP |
| GO:0009506 | plasmodesma | CC |
| GO:0009507 | chloroplast | CC |
| GO:0009526 | plastid envelope | CC |
| GO:0009536 | plastid | CC |
| GO:0009605 | response to external stimulus | BP |
| GO:0009607 | response to biotic stimulus | BP |
| GO:0009615 | response to virus | BP |
| GO:0009617 | response to bacterium | BP |
| GO:0009620 | response to fungus | BP |
| GO:0009628 | response to abiotic stimulus | BP |
| GO:0009941 | chloroplast envelope | CC |
| GO:0009987 | cellular process | BP |
| GO:0010029 | regulation of seed germination | BP |
| GO:0010035 | response to inorganic substance | BP |
| GO:0010038 | response to metal ion | BP |
| GO:0010118 | stomatal movement | BP |
| GO:0010187 | negative regulation of seed germination | BP |
| GO:0012505 | endomembrane system | CC |
| GO:0016020 | membrane | CC |
| GO:0016363 | nuclear matrix | CC |
| GO:0019899 | enzyme binding | MF |
| GO:0022626 | cytosolic ribosome | CC |
| GO:0030054 | cell junction | CC |
| GO:0030312 | external encapsulating structure | CC |
| GO:0031090 | organelle membrane | CC |
| GO:0031967 | organelle envelope | CC |
| GO:0031974 | membrane-enclosed lumen | CC |
| GO:0031975 | envelope | CC |
| GO:0031981 | nuclear lumen | CC |
| GO:0032991 | protein-containing complex | CC |
| GO:0034399 | nuclear periphery | CC |
| GO:0042221 | response to chemical | BP |
| GO:0042742 | defense response to bacterium | BP |
| GO:0043207 | response to external biotic stimulus | BP |
| GO:0043226 | organelle | CC |
| GO:0043227 | membrane-bounded organelle | CC |
| GO:0043228 | non-membrane-bounded organelle | CC |
| GO:0043229 | intracellular organelle | CC |
| GO:0043231 | intracellular membrane-bounded organelle | CC |
| GO:0043232 | intracellular non-membrane-bounded organelle | CC |
| GO:0043233 | organelle lumen | CC |
| GO:0044422 | obsolete organelle part | CC |
| GO:0044424 | obsolete intracellular part | CC |
| GO:0044428 | obsolete nuclear part | CC |
| GO:0044434 | obsolete chloroplast part | CC |
| GO:0044435 | obsolete plastid part | CC |
| GO:0044437 | obsolete vacuolar part | CC |
| GO:0044444 | obsolete cytoplasmic part | CC |
| GO:0044445 | obsolete cytosolic part | CC |
| GO:0044446 | obsolete intracellular organelle part | CC |
| GO:0044464 | obsolete cell part | CC |
| GO:0046686 | response to cadmium ion | BP |
| GO:0048046 | apoplast | CC |
| GO:0048519 | negative regulation of biological process | BP |
| GO:0048580 | regulation of post-embryonic development | BP |
| GO:0048581 | negative regulation of post-embryonic development | BP |
| GO:0050789 | regulation of biological process | BP |
| GO:0050793 | regulation of developmental process | BP |
| GO:0050832 | defense response to fungus | BP |
| GO:0050896 | response to stimulus | BP |
| GO:0051093 | negative regulation of developmental process | BP |
| GO:0051239 | regulation of multicellular organismal process | BP |
| GO:0051241 | negative regulation of multicellular organismal process | BP |
| GO:0051704 | obsolete multi-organism process | BP |
| GO:0051707 | response to other organism | BP |
| GO:0055044 | symplast | CC |
| GO:0065007 | biological regulation | BP |
| GO:0070013 | intracellular organelle lumen | CC |
| GO:0071944 | cell periphery | CC |
| GO:0080167 | response to karrikin | BP |
| GO:0090332 | stomatal closure | BP |
| GO:0098542 | defense response to other organism | BP |
| GO:0098588 | bounding membrane of organelle | CC |
| GO:0098805 | membrane | CC |
| GO:1900140 | regulation of seedling development | BP |
| GO:1990904 | ribonucleoprotein complex | CC |
| GO:2000026 | regulation of multicellular organismal development | BP |
| KEGG Term | Name | Description |
|---|---|---|
| map04144 | Endocytosis | Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type. |
| map04141 | Protein processing in endoplasmic reticulum | The endoplasmic reticulum (ER) is a subcellular organelle where proteins are folded with the help of lumenal chaperones. Newly synthesized peptides enter the ER via the sec61 pore and are glycosylated. Correctly folded proteins are packaged into transport vesicles that shuttle them to the Golgi complex. Misfolded proteins are retained within the ER lumen in complex with molecular chaperones. Proteins that are terminally misfolded bind to BiP and are directed toward degradation through the proteasome in a process called ER-associated degradation (ERAD). Accumulation of misfolded proteins in the ER causes ER stress and activates a signaling pathway called the unfolded protein response (UPR). In certain severe situations, however, the protective mechanisms activated by the UPR are not sufficient to restore normal ER function and cells die by apoptosis. |
| map03040 | Spliceosome | After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified. |