Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
CSS0044970.g
View in Genome Browser
Position
Chr1:22156111-22169426 (-)
13315bp
Gene Type
gene
Gene Description (Protein Product)
E3 SUMO-protein ligase
Organism
Camellia sinensis
Also AS AT5G60410

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
CSS0049238.g E3 ubiquitin-protein ligase
CSS0050350.g transcription factor
CSS0050406.g MADS-box protein
Regulatory gene
CSS0000556.g transcription factor
CSS0000859.g MADS-box transcription factor
CSS0002234.g Agamous-like MADS-box protein AGL12

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0000902 cell morphogenesis BP
GO:0001101 response to acid chemical BP
GO:0002682 regulation of immune system process BP
GO:0002683 negative regulation of immune system process BP
GO:0002831 regulation of response to biotic stimulus BP
GO:0002832 negative regulation of response to biotic stimulus BP
GO:0003006 developmental process involved in reproduction BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0006464 protein modification process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006935 chemotaxis BP
GO:0006950 response to stress BP
GO:0007154 cell communication BP
GO:0007275 multicellular organism development BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009266 response to temperature stimulus BP
GO:0009267 cellular response to starvation BP
GO:0009408 response to heat BP
GO:0009409 response to cold BP
GO:0009414 response to water deprivation BP
GO:0009415 response to water BP
GO:0009553 embryo sac development BP
GO:0009593 detection of chemical stimulus BP
GO:0009605 response to external stimulus BP
GO:0009628 response to abiotic stimulus BP
GO:0009653 anatomical structure morphogenesis BP
GO:0009787 regulation of abscisic acid-activated signaling pathway BP
GO:0009791 post-embryonic development BP
GO:0009826 unidimensional cell growth BP
GO:0009856 pollination BP
GO:0009908 flower development BP
GO:0009909 regulation of flower development BP
GO:0009910 negative regulation of flower development BP
GO:0009966 regulation of signal transduction BP
GO:0009987 cellular process BP
GO:0009991 response to extracellular stimulus BP
GO:0010035 response to inorganic substance BP
GO:0010112 regulation of systemic acquired resistance BP
GO:0010113 negative regulation of systemic acquired resistance BP
GO:0010183 pollen tube guidance BP
GO:0010247 detection of phosphate ion BP
GO:0010286 heat acclimation BP
GO:0010337 regulation of salicylic acid metabolic process BP
GO:0010565 regulation of cellular ketone metabolic process BP
GO:0010646 regulation of cell communication BP
GO:0010817 regulation of hormone levels BP
GO:0016036 cellular response to phosphate starvation BP
GO:0016043 cellular component organization BP
GO:0016049 cell growth BP
GO:0016740 transferase activity MF
GO:0016925 protein sumoylation BP
GO:0018193 peptidyl-amino acid modification BP
GO:0018205 peptidyl-lysine modification BP
GO:0019222 regulation of metabolic process BP
GO:0019538 protein metabolic process BP
GO:0019787 ubiquitin-like protein transferase activity MF
GO:0019789 SUMO transferase activity MF
GO:0022414 reproductive process BP
GO:0023051 regulation of signaling BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031347 regulation of defense response BP
GO:0031348 negative regulation of defense response BP
GO:0031667 response to nutrient levels BP
GO:0031668 cellular response to extracellular stimulus BP
GO:0031669 cellular response to nutrient levels BP
GO:0032101 regulation of response to external stimulus BP
GO:0032102 negative regulation of response to external stimulus BP
GO:0032350 regulation of hormone metabolic process BP
GO:0032446 protein modification by small protein conjugation BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032989 cellular component morphogenesis BP
GO:0033554 cellular response to stress BP
GO:0035670 plant-type ovary development BP
GO:0036211 protein modification process BP
GO:0040007 growth BP
GO:0040008 regulation of growth BP
GO:0040011 locomotion BP
GO:0042221 response to chemical BP
GO:0042330 taxis BP
GO:0042594 response to starvation BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043412 macromolecule modification BP
GO:0043900 obsolete regulation of multi-organism process BP
GO:0043901 obsolete negative regulation of multi-organism process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044464 obsolete cell part CC
GO:0044706 multi-multicellular organism process BP
GO:0045088 regulation of innate immune response BP
GO:0045824 negative regulation of innate immune response BP
GO:0048229 gametophyte development BP
GO:0048367 shoot system development BP
GO:0048437 floral organ development BP
GO:0048438 floral whorl development BP
GO:0048440 carpel development BP
GO:0048467 gynoecium development BP
GO:0048481 plant ovule development BP
GO:0048519 negative regulation of biological process BP
GO:0048580 regulation of post-embryonic development BP
GO:0048581 negative regulation of post-embryonic development BP
GO:0048583 regulation of response to stimulus BP
GO:0048585 negative regulation of response to stimulus BP
GO:0048589 developmental growth BP
GO:0048608 reproductive structure development BP
GO:0048731 system development BP
GO:0048827 phyllome development BP
GO:0048831 regulation of shoot system development BP
GO:0048856 anatomical structure development BP
GO:0048868 pollen tube development BP
GO:0048869 cellular developmental process BP
GO:0050776 regulation of immune response BP
GO:0050777 negative regulation of immune response BP
GO:0050789 regulation of biological process BP
GO:0050793 regulation of developmental process BP
GO:0050794 regulation of cellular process BP
GO:0050826 response to freezing BP
GO:0050896 response to stimulus BP
GO:0050918 positive chemotaxis BP
GO:0051093 negative regulation of developmental process BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051239 regulation of multicellular organismal process BP
GO:0051241 negative regulation of multicellular organismal process BP
GO:0051301 cell division BP
GO:0051606 detection of stimulus BP
GO:0051704 obsolete multi-organism process BP
GO:0051716 cellular response to stimulus BP
GO:0060560 developmental growth involved in morphogenesis BP
GO:0061458 reproductive system development BP
GO:0061659 ubiquitin-like protein ligase activity MF
GO:0061665 SUMO ligase activity MF
GO:0062012 regulation of small molecule metabolic process BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0070647 protein modification by small protein conjugation or removal BP
GO:0071496 cellular response to external stimulus BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0080134 regulation of response to stress BP
GO:0090352 regulation of nitrate assimilation BP
GO:0090567 reproductive shoot system development BP
GO:0099402 plant organ development BP
GO:0140096 catalytic activity, acting on a protein MF
GO:1901419 regulation of response to alcohol BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901700 response to oxygen-containing compound BP
GO:1903314 regulation of nitrogen cycle metabolic process BP
GO:1905957 regulation of cellular response to alcohol BP
GO:2000026 regulation of multicellular organismal development BP
GO:2000070 regulation of response to water deprivation BP
GO:2000241 regulation of reproductive process BP
GO:2000242 negative regulation of reproductive process BP
KEGG Term Name Description
map04120 Ubiquitin mediated proteolysis Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
map04120 Ubiquitin mediated proteolysis Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.