PPGR - Gene Detail

Gene ID	CSS0045008.g View in Genome Browser
Position	Chr13:71713876-71716438 (+) 2562bp
Gene Type	gene
Gene Description (Protein Product)	photosystem I subunit
Organism	Camellia sinensis
Also AS	AT1G08380

upstream:

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Protein-protein interaction (PPI)	CSS0049576.g The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated CSS0046252.g Chlorophyll a-b binding protein CSS0045275.g Photosystem I reaction center subunit N
Regulatory gene	CSS0004712.g GAGA binding protein-like family CSS0007067.g Protein BASIC PENTACYSTEINE6-like CSS0008658.g Protein BASIC PENTACYSTEINE2-like

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Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

GO Term	Description	GO Category
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0006091	generation of precursor metabolites and energy	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009507	chloroplast	CC
GO:0009521	photosystem	CC
GO:0009522	photosystem I	CC
GO:0009536	plastid	CC
GO:0009579	thylakoid	CC
GO:0009765	photosynthesis, light harvesting	BP
GO:0009767	photosynthetic electron transport chain	BP
GO:0009768	photosynthesis, light harvesting in photosystem I	BP
GO:0009987	cellular process	BP
GO:0015979	photosynthesis	BP
GO:0016020	membrane	CC
GO:0019684	photosynthesis, light reaction	BP
GO:0022900	electron transport chain	BP
GO:0032991	protein-containing complex	CC
GO:0034357	photosynthetic membrane	CC
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044237	cellular metabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044425	obsolete membrane part	CC
GO:0044436	obsolete thylakoid part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0055114	obsolete oxidation-reduction process	BP
GO:0098796	membrane protein complex	CC

KEGG Term	Name	Description
map01100	Metabolic pathways	-
map00195	Photosynthesis	Photosynthesis in green plants and specialized bacteria is the process of utilizing light energy to synthesize organic compounds from carbon dioxide and water. It consists of the light dependent part (light reaction) and the light independent part (dark reaction, carbon fixation). The light reaction takes place in thylakoid, a membrane-bound compartment inside chloroplasts and cyanobacteria. The light energy is used by photosystems I and II to generate proton motive force and reducing power (NADPH or NADH). The proton motive force is used by ATP synthase to generate ATP, essentially in the same way as the mitochondrial respiratory chain. The supplies of ATP and NAD(P)H are then used to fix carbon dioxide.