PPGR - Gene Detail

Basic Information

Gene ID	CSS0046274.g View in Genome Browser
Position	Chr10:9435588-9460826 (+) 25238bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the short-chain dehydrogenases reductases (SDR) family
Organism	Camellia sinensis
Also AS	AT1G24470

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

CSS0047106.g Catalyzes the third of the four reactions of the long- chain fatty acids elongation cycle. This endoplasmic reticulum- bound enzymatic process, allows the addition of two carbons to the chain of long- and very long-chain fatty acids VLCFAs per cycle. This enzyme catalyzes the dehydration of the 3-hydroxyacyl-CoA intermediate into trans-2,3-enoyl-CoA, within each cycle of fatty acid elongation. Thereby, it participates to the production of VLCFAs of different chain lengths that are involved in multiple biological processes as precursors of membrane lipids and lipid mediators

CSS0047402.g 3-ketoacyl-CoA synthase

CSS0049675.g Short-chain type dehydrogenase

Regulatory gene

CSS0000556.g transcription factor

CSS0000859.g MADS-box transcription factor

CSS0002234.g Agamous-like MADS-box protein AGL12

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005783	endoplasmic reticulum	CC
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0012505	endomembrane system	CC
GO:0016491	oxidoreductase activity	MF
GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	MF
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0045703	ketoreductase activity	MF
GO:0055114	obsolete oxidation-reduction process	BP

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map01040	Biosynthesis of unsaturated fatty acids	-
map00062	Fatty acid elongation in mitochondria	-