PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	CSS0046306.g View in Genome Browser
Position	Chr2:157881747-157890780 (-) 9033bp
Gene Type	gene
Gene Description (Protein Product)	Exosome component 10-like
Organism	Camellia sinensis
Also AS	AT5G35910

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	CSS0048550.g Exosome complex component CSS0049240.g ATP-dependent RNA helicase CSS0050172.g Exosome complex component
Regulatory gene	CSS0000556.g transcription factor CSS0000859.g MADS-box transcription factor CSS0002234.g Agamous-like MADS-box protein AGL12

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000175	3'-5'-RNA exonuclease activity	MF
GO:0000178	exosome (RNase complex)	CC
GO:0000460	maturation of 5.8S rRNA	BP
GO:0000785	chromatin	CC
GO:0000956	nuclear-transcribed mRNA catabolic process	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004518	nuclease activity	MF
GO:0004527	exonuclease activity	MF
GO:0004532	exoribonuclease activity	MF
GO:0004540	ribonuclease activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005694	chromosome	CC
GO:0005730	nucleolus	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006259	DNA metabolic process	BP
GO:0006304	DNA modification	BP
GO:0006305	DNA alkylation	BP
GO:0006306	DNA methylation	BP
GO:0006364	rRNA processing	BP
GO:0006396	RNA processing	BP
GO:0006401	RNA catabolic process	BP
GO:0006402	mRNA catabolic process	BP
GO:0006403	RNA localization	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0007549	dosage compensation	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008298	intracellular mRNA localization	BP
GO:0008334	histone mRNA metabolic process	BP
GO:0008408	3'-5' exonuclease activity	MF
GO:0009048	dosage compensation by inactivation of X chromosome	BP
GO:0009056	catabolic process	BP
GO:0009057	macromolecule catabolic process	BP
GO:0009889	regulation of biosynthetic process	BP
GO:0009890	negative regulation of biosynthetic process	BP
GO:0009892	negative regulation of metabolic process	BP
GO:0009893	positive regulation of metabolic process	BP
GO:0009987	cellular process	BP
GO:0010467	gene expression	BP
GO:0010468	regulation of gene expression	BP
GO:0010556	regulation of macromolecule biosynthetic process	BP
GO:0010558	negative regulation of macromolecule biosynthetic process	BP
GO:0010604	positive regulation of macromolecule metabolic process	BP
GO:0010605	negative regulation of macromolecule metabolic process	BP
GO:0010629	negative regulation of gene expression	BP
GO:0010638	positive regulation of organelle organization	BP
GO:0010639	negative regulation of organelle organization	BP
GO:0016070	RNA metabolic process	BP
GO:0016071	mRNA metabolic process	BP
GO:0016072	rRNA metabolic process	BP
GO:0016075	rRNA catabolic process	BP
GO:0016458	obsolete gene silencing	BP
GO:0016787	hydrolase activity	MF
GO:0016788	hydrolase activity, acting on ester bonds	MF
GO:0016796	exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	MF
GO:0016896	RNA exonuclease activity, producing 5'-phosphomonoesters	MF
GO:0019219	regulation of nucleobase-containing compound metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0019439	aromatic compound catabolic process	BP
GO:0022613	ribonucleoprotein complex biogenesis	BP
GO:0031047	RNA-mediated gene silencing	BP
GO:0031056	regulation of histone modification	BP
GO:0031058	positive regulation of histone modification	BP
GO:0031060	regulation of histone methylation	BP
GO:0031062	positive regulation of histone methylation	BP
GO:0031323	regulation of cellular metabolic process	BP
GO:0031324	negative regulation of cellular metabolic process	BP
GO:0031325	positive regulation of cellular metabolic process	BP
GO:0031326	regulation of cellular biosynthetic process	BP
GO:0031327	negative regulation of cellular biosynthetic process	BP
GO:0031399	regulation of protein modification process	BP
GO:0031401	positive regulation of protein modification process	BP
GO:0031974	membrane-enclosed lumen	CC
GO:0031981	nuclear lumen	CC
GO:0032204	regulation of telomere maintenance	BP
GO:0032205	negative regulation of telomere maintenance	BP
GO:0032210	regulation of telomere maintenance via telomerase	BP
GO:0032211	negative regulation of telomere maintenance via telomerase	BP
GO:0032259	methylation	BP
GO:0032268	regulation of protein metabolic process	BP
GO:0032270	positive regulation of protein metabolic process	BP
GO:0032879	regulation of localization	BP
GO:0032991	protein-containing complex	CC
GO:0033036	macromolecule localization	BP
GO:0033043	regulation of organelle organization	BP
GO:0033044	regulation of chromosome organization	BP
GO:0034470	ncRNA processing	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034655	nucleobase-containing compound catabolic process	BP
GO:0034660	ncRNA metabolic process	BP
GO:0034661	ncRNA catabolic process	BP
GO:0035327	euchromatin	CC
GO:0040029	epigenetic regulation of gene expression	BP
GO:0042254	ribosome biogenesis	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0043412	macromolecule modification	BP
GO:0043414	macromolecule methylation	BP
GO:0043632	modification-dependent macromolecule catabolic process	BP
GO:0043633	polyadenylation-dependent RNA catabolic process	BP
GO:0043634	polyadenylation-dependent ncRNA catabolic process	BP
GO:0044085	cellular component biogenesis	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044248	cellular catabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044265	cellular macromolecule catabolic process	BP
GO:0044270	cellular nitrogen compound catabolic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044427	obsolete chromosomal part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0044728	obsolete DNA methylation or demethylation	BP
GO:0045934	negative regulation of nucleobase-containing compound metabolic process	BP
GO:0046483	heterocycle metabolic process	BP
GO:0046700	heterocycle catabolic process	BP
GO:0048518	positive regulation of biological process	BP
GO:0048519	negative regulation of biological process	BP
GO:0048522	positive regulation of cellular process	BP
GO:0048523	negative regulation of cellular process	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0051052	regulation of DNA metabolic process	BP
GO:0051053	negative regulation of DNA metabolic process	BP
GO:0051128	regulation of cellular component organization	BP
GO:0051129	negative regulation of cellular component organization	BP
GO:0051130	positive regulation of cellular component organization	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051172	negative regulation of nitrogen compound metabolic process	BP
GO:0051173	positive regulation of nitrogen compound metabolic process	BP
GO:0051179	localization	BP
GO:0051246	regulation of protein metabolic process	BP
GO:0051247	positive regulation of protein metabolic process	BP
GO:0051641	cellular localization	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0061085	regulation of histone H3-K27 methylation	BP
GO:0061087	positive regulation of histone H3-K27 methylation	BP
GO:0065007	biological regulation	BP
GO:0065008	regulation of biological quality	BP
GO:0070013	intracellular organelle lumen	CC
GO:0070727	cellular macromolecule localization	BP
GO:0071025	RNA surveillance	BP
GO:0071027	nuclear RNA surveillance	BP
GO:0071028	nuclear mRNA surveillance	BP
GO:0071029	nuclear ncRNA surveillance	BP
GO:0071030	nuclear mRNA surveillance of spliceosomal pre-mRNA splicing	BP
GO:0071033	nuclear mRNA surveillance	BP
GO:0071034	CUT catabolic process	BP
GO:0071035	nuclear polyadenylation-dependent rRNA catabolic process	BP
GO:0071043	CUT metabolic process	BP
GO:0071044	histone mRNA catabolic process	BP
GO:0071046	nuclear polyadenylation-dependent ncRNA catabolic process	BP
GO:0071048	nuclear mRNA surveillance	BP
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0080188	gene silencing by RNA-directed DNA methylation	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0090305	nucleic acid phosphodiester bond hydrolysis	BP
GO:0090501	RNA phosphodiester bond hydrolysis	BP
GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic	BP
GO:0140098	catalytic activity, acting on RNA	MF
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901361	organic cyclic compound catabolic process	BP
GO:1901575	organic substance catabolic process	BP
GO:1902275	regulation of chromatin organization	BP
GO:1902464	regulation of histone H3-K27 trimethylation	BP
GO:1902466	positive regulation of histone H3-K27 trimethylation	BP
GO:1902494	catalytic complex	CC
GO:1904356	regulation of telomere maintenance via telomere lengthening	BP
GO:1904357	negative regulation of telomere maintenance via telomere lengthening	BP
GO:1904872	regulation of telomerase RNA localization to Cajal body	BP
GO:1905269	positive regulation of chromatin organization	BP
GO:1905354	exoribonuclease complex	CC
GO:2000112	regulation of cellular macromolecule biosynthetic process	BP
GO:2000113	negative regulation of cellular macromolecule biosynthetic process	BP
GO:2000278	regulation of DNA biosynthetic process	BP
GO:2000279	negative regulation of DNA biosynthetic process	BP
GO:2001251	negative regulation of chromosome organization	BP
GO:2001252	positive regulation of chromosome organization	BP

KEGG Term	Name	Description
map03018	RNA degradation	The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.