PPGR - Gene Detail

Basic Information

Gene ID	CSS0046821.g View in Genome Browser
Position	Chr15:83076548-83078739 (-) 2191bp
Gene Type	gene
Gene Description (Protein Product)	Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells
Organism	Camellia sinensis
Also AS	AT4G02620

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

CSS0048261.g Inorganic pyrophosphatase

CSS0048017.g Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a ATP6 static relative to the rotary elements

CSS0050096.g Belongs to the adenylate kinase family

Regulatory gene

CSS0002271.g Heat Stress Transcription Factor

CSS0006648.g Heat Stress Transcription Factor

CSS0013166.g Heat Stress Transcription Factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005215	transporter activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005773	vacuole	CC
GO:0005774	vacuolar membrane	CC
GO:0005794	Golgi apparatus	CC
GO:0005886	plasma membrane	CC
GO:0006810	transport	BP
GO:0006811	monoatomic ion transport	BP
GO:0008150	biological_process	BP
GO:0012505	endomembrane system	CC
GO:0015075	monoatomic ion transmembrane transporter activity	MF
GO:0015399	primary active transmembrane transporter activity	MF
GO:0015405	ATPase-coupled transmembrane transporter activity	MF
GO:0016020	membrane	CC
GO:0016462	pyrophosphatase activity	MF
GO:0016787	hydrolase activity	MF
GO:0016817	hydrolase activity, acting on acid anhydrides	MF
GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	MF
GO:0016887	ATP hydrolysis activity	MF
GO:0017111	ribonucleoside triphosphate phosphatase activity	MF
GO:0022804	active transmembrane transporter activity	MF
GO:0022853	active monoatomic ion transmembrane transporter activity	MF
GO:0022857	transmembrane transporter activity	MF
GO:0031090	organelle membrane	CC
GO:0034220	monoatomic ion transmembrane transport	BP
GO:0042623	ATP hydrolysis activity	MF
GO:0042625	ATPase-coupled ion transmembrane transporter activity	MF
GO:0042626	ATPase-coupled transmembrane transporter activity	MF
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043492	ATPase-coupled transmembrane transporter activity	MF
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044437	obsolete vacuolar part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0051179	localization	BP
GO:0051234	establishment of localization	BP
GO:0055085	transmembrane transport	BP
GO:0071944	cell periphery	CC
GO:0090662	transmembrane transport	BP
GO:0098588	bounding membrane of organelle	CC
GO:0098660	inorganic ion transmembrane transport	BP
GO:0098805	membrane	CC
GO:0099131	monoatomic ion transmembrane transport	BP

KEGG Term	Name	Description
map04145	Phagosome	Phagocytosis is the process of taking in relatively large particles by a cell, and is a central mechanism in the tissue remodeling, inflammation, and defense against infectious agents. A phagosome is formed when the specific receptors on the phagocyte surface recognize ligands on the particle surface. After formation, nascent phagosomes progressively acquire digestive characteristics. This maturation of phagosomes involves regulated interaction with the other membrane organelles, including recycling endosomes, late endosomes and lysosomes. The fusion of phagosomes and lysosomes releases toxic products that kill most bacteria and degrade them into fragments. However, some bacteria have strategies to escape the bactericidal mechanisms associated with phagocytosis and survive within host phagocytes.
map01100	Metabolic pathways	-
map00190	Oxidative phosphorylation	-