PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	CSS0047023.g View in Genome Browser
Position	Chr15:27254032-27258097 (+) 4065bp
Gene Type	gene
Gene Description (Protein Product)	ribosome localization
Organism	Camellia sinensis
Also AS	AT5G55190

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	CSS0047562.g Ran-binding protein 1 homolog CSS0048510.g Exportin 1-like protein CSS0049196.g ubiquitin-NEDD8-like protein
Regulatory gene	CSS0000305.g Zinc finger protein CSS0001087.g ZINC FINGER protein CSS0002339.g zinc finger

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0000054	ribosomal subunit export from nucleus	BP
GO:0000055	ribosomal large subunit export from nucleus	BP
GO:0000056	ribosomal small subunit export from nucleus	BP
GO:0000060	obsolete protein import into nucleus, translocation	BP
GO:0000070	mitotic sister chromatid segregation	BP
GO:0000166	nucleotide binding	MF
GO:0000226	microtubule cytoskeleton organization	BP
GO:0000278	mitotic cell cycle	BP
GO:0000280	nuclear division	BP
GO:0000287	magnesium ion binding	MF
GO:0000819	sister chromatid segregation	BP
GO:0001654	eye development	BP
GO:0001673	male germ cell nucleus	CC
GO:0001882	nucleoside binding	MF
GO:0001883	purine nucleoside binding	MF
GO:0002177	manchette	CC
GO:0003006	developmental process involved in reproduction	BP
GO:0003407	neural retina development	BP
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003682	chromatin binding	MF
GO:0003712	transcription coregulator activity	MF
GO:0003713	transcription coactivator activity	MF
GO:0003723	RNA binding	MF
GO:0003824	catalytic activity	MF
GO:0003924	GTPase activity	MF
GO:0005049	nuclear export signal receptor activity	MF
GO:0005102	signaling receptor binding	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005525	GTP binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005635	nuclear envelope	CC
GO:0005643	nuclear pore	CC
GO:0005654	nucleoplasm	CC
GO:0005730	nucleolus	CC
GO:0005737	cytoplasm	CC
GO:0005768	endosome	CC
GO:0005814	centriole	CC
GO:0005815	microtubule organizing center	CC
GO:0005829	cytosol	CC
GO:0005856	cytoskeleton	CC
GO:0005929	cilium	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006163	purine nucleotide metabolic process	BP
GO:0006259	DNA metabolic process	BP
GO:0006355	regulation of DNA-templated transcription	BP
GO:0006403	RNA localization	BP
GO:0006404	RNA import into nucleus	BP
GO:0006405	RNA export from nucleus	BP
GO:0006409	tRNA export from nucleus	BP
GO:0006606	protein import into nucleus	BP
GO:0006611	protein export from nucleus	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006753	nucleoside phosphate metabolic process	BP
GO:0006793	phosphorus metabolic process	BP
GO:0006796	phosphate-containing compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006810	transport	BP
GO:0006886	intracellular protein transport	BP
GO:0006913	nucleocytoplasmic transport	BP
GO:0006996	organelle organization	BP
GO:0007010	cytoskeleton organization	BP
GO:0007017	microtubule-based process	BP
GO:0007049	cell cycle	BP
GO:0007051	spindle organization	BP
GO:0007052	mitotic spindle organization	BP
GO:0007059	chromosome segregation	BP
GO:0007154	cell communication	BP
GO:0007165	signal transduction	BP
GO:0007275	multicellular organism development	BP
GO:0007276	gamete generation	BP
GO:0007281	germ cell development	BP
GO:0007283	spermatogenesis	BP
GO:0007286	spermatid development	BP
GO:0007399	nervous system development	BP
GO:0007417	central nervous system development	BP
GO:0007420	brain development	BP
GO:0007423	sensory organ development	BP
GO:0008104	protein localization	BP
GO:0008134	transcription factor binding	MF
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009116	nucleoside metabolic process	BP
GO:0009117	nucleotide metabolic process	BP
GO:0009119	ribonucleoside metabolic process	BP
GO:0009141	nucleoside triphosphate metabolic process	BP
GO:0009144	purine nucleoside triphosphate metabolic process	BP
GO:0009150	purine ribonucleotide metabolic process	BP
GO:0009199	ribonucleoside triphosphate metabolic process	BP
GO:0009205	purine ribonucleoside triphosphate metabolic process	BP
GO:0009259	ribonucleotide metabolic process	BP
GO:0009719	response to endogenous stimulus	BP
GO:0009725	response to hormone	BP
GO:0009755	hormone-mediated signaling pathway	BP
GO:0009889	regulation of biosynthetic process	BP
GO:0009891	positive regulation of biosynthetic process	BP
GO:0009892	negative regulation of metabolic process	BP
GO:0009893	positive regulation of metabolic process	BP
GO:0009987	cellular process	BP
GO:0010033	response to organic substance	BP
GO:0010468	regulation of gene expression	BP
GO:0010556	regulation of macromolecule biosynthetic process	BP
GO:0010557	positive regulation of macromolecule biosynthetic process	BP
GO:0010586	miRNA metabolic process	BP
GO:0010604	positive regulation of macromolecule metabolic process	BP
GO:0010605	negative regulation of macromolecule metabolic process	BP
GO:0010608	post-transcriptional regulation of gene expression	BP
GO:0010628	positive regulation of gene expression	BP
GO:0010629	negative regulation of gene expression	BP
GO:0012505	endomembrane system	CC
GO:0014070	response to organic cyclic compound	BP
GO:0015031	protein transport	BP
GO:0015630	microtubule cytoskeleton	CC
GO:0015833	peptide transport	BP
GO:0015931	nucleobase-containing compound transport	BP
GO:0016032	viral process	BP
GO:0016043	cellular component organization	BP
GO:0016070	RNA metabolic process	BP
GO:0016441	post-transcriptional gene silencing	BP
GO:0016458	obsolete gene silencing	BP
GO:0016462	pyrophosphatase activity	MF
GO:0016787	hydrolase activity	MF
GO:0016817	hydrolase activity, acting on acid anhydrides	MF
GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	MF
GO:0017038	protein import	BP
GO:0017076	purine nucleotide binding	MF
GO:0017111	ribonucleoside triphosphate phosphatase activity	MF
GO:0019001	guanyl nucleotide binding	MF
GO:0019003	GDP binding	MF
GO:0019058	viral life cycle	BP
GO:0019216	regulation of lipid metabolic process	BP
GO:0019218	regulation of steroid metabolic process	BP
GO:0019219	regulation of nucleobase-containing compound metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0019637	organophosphate metabolic process	BP
GO:0019693	ribose phosphate metabolic process	BP
GO:0019904	protein domain specific binding	MF
GO:0019953	sexual reproduction	BP
GO:0021537	telencephalon development	BP
GO:0021543	pallium development	BP
GO:0021761	limbic system development	BP
GO:0021766	hippocampus development	BP
GO:0022402	cell cycle process	BP
GO:0022412	cellular process involved in reproduction in multicellular organism	BP
GO:0022414	reproductive process	BP
GO:0022613	ribonucleoprotein complex biogenesis	BP
GO:0023052	signaling	BP
GO:0030029	actin filament-based process	BP
GO:0030036	actin cytoskeleton organization	BP
GO:0030154	cell differentiation	BP
GO:0030496	midbody	CC
GO:0030518	intracellular steroid hormone receptor signaling pathway	BP
GO:0030521	androgen receptor signaling pathway	BP
GO:0030522	intracellular receptor signaling pathway	BP
GO:0030900	forebrain development	BP
GO:0031047	RNA-mediated gene silencing	BP
GO:0031074	nucleocytoplasmic transport complex	CC
GO:0031323	regulation of cellular metabolic process	BP
GO:0031325	positive regulation of cellular metabolic process	BP
GO:0031326	regulation of cellular biosynthetic process	BP
GO:0031328	positive regulation of cellular biosynthetic process	BP
GO:0031410	cytoplasmic vesicle	CC
GO:0031503	protein-containing complex localization	BP
GO:0031514	motile cilium	CC
GO:0031960	response to corticosteroid	BP
GO:0031967	organelle envelope	CC
GO:0031974	membrane-enclosed lumen	CC
GO:0031975	envelope	CC
GO:0031981	nuclear lumen	CC
GO:0031982	vesicle	CC
GO:0032092	positive regulation of protein binding	BP
GO:0032386	regulation of intracellular transport	BP
GO:0032388	positive regulation of intracellular transport	BP
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0032504	multicellular organism reproduction	BP
GO:0032549	ribonucleoside binding	MF
GO:0032550	purine ribonucleoside binding	MF
GO:0032553	ribonucleotide binding	MF
GO:0032555	purine ribonucleotide binding	MF
GO:0032561	guanyl ribonucleotide binding	MF
GO:0032870	cellular response to hormone stimulus	BP
GO:0032879	regulation of localization	BP
GO:0032880	regulation of protein localization	BP
GO:0032991	protein-containing complex	CC
GO:0033036	macromolecule localization	BP
GO:0033157	regulation of intracellular protein transport	BP
GO:0033365	protein localization to organelle	BP
GO:0033750	ribosome localization	BP
GO:0033993	response to lipid	BP
GO:0034504	protein localization to nucleus	BP
GO:0034613	protein localization	BP
GO:0034629	protein-containing complex localization	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034660	ncRNA metabolic process	BP
GO:0035068	RISC complex	CC
GO:0035194	RNA-mediated post-transcriptional gene silencing	BP
GO:0035195	miRNA-mediated gene silencing	BP
GO:0035257	nuclear receptor binding	MF
GO:0035258	nuclear receptor binding	MF
GO:0035281	pre-miRNA export from nucleus	BP
GO:0035639	purine ribonucleoside triphosphate binding	MF
GO:0036094	small molecule binding	MF
GO:0036126	sperm flagellum	CC
GO:0040029	epigenetic regulation of gene expression	BP
GO:0042221	response to chemical	BP
GO:0042254	ribosome biogenesis	BP
GO:0042272	nuclear RNA export factor complex	CC
GO:0042278	purine nucleoside metabolic process	BP
GO:0042565	RNA nuclear export complex	CC
GO:0042886	amide transport	BP
GO:0042995	cell projection	CC
GO:0043010	camera-type eye development	BP
GO:0043073	germ cell nucleus	CC
GO:0043167	ion binding	MF
GO:0043168	anion binding	MF
GO:0043169	cation binding	MF
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0043393	regulation of protein binding	BP
GO:0043401	steroid hormone mediated signaling pathway	BP
GO:0044085	cellular component biogenesis	BP
GO:0044093	positive regulation of molecular function	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044403	biological process involved in symbiotic interaction	BP
GO:0044419	biological process involved in interspecies interaction between organisms	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044430	obsolete cytoskeletal part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044450	obsolete microtubule organizing center part	CC
GO:0044451	obsolete nucleoplasm part	CC
GO:0044464	obsolete cell part	CC
GO:0044703	multi-organism reproductive process	BP
GO:0044766	obsolete multi-organism transport	BP
GO:0044877	protein-containing complex binding	MF
GO:0045184	establishment of protein localization	BP
GO:0045505	dynein intermediate chain binding	MF
GO:0045540	regulation of cholesterol biosynthetic process	BP
GO:0045893	positive regulation of DNA-templated transcription	BP
GO:0045935	positive regulation of nucleobase-containing compound metabolic process	BP
GO:0046039	GTP metabolic process	BP
GO:0046128	purine ribonucleoside metabolic process	BP
GO:0046483	heterocycle metabolic process	BP
GO:0046794	transport of virus	BP
GO:0046822	regulation of nucleocytoplasmic transport	BP
GO:0046824	positive regulation of nucleocytoplasmic transport	BP
GO:0046825	regulation of protein export from nucleus	BP
GO:0046827	positive regulation of protein export from nucleus	BP
GO:0046872	metal ion binding	MF
GO:0046890	regulation of lipid biosynthetic process	BP
GO:0046907	intracellular transport	BP
GO:0046982	protein heterodimerization activity	MF
GO:0046983	protein dimerization activity	MF
GO:0048232	male gamete generation	BP
GO:0048285	organelle fission	BP
GO:0048468	cell development	BP
GO:0048513	animal organ development	BP
GO:0048515	spermatid differentiation	BP
GO:0048518	positive regulation of biological process	BP
GO:0048519	negative regulation of biological process	BP
GO:0048522	positive regulation of cellular process	BP
GO:0048545	response to steroid hormone	BP
GO:0048609	multicellular organismal reproductive process	BP
GO:0048731	system development	BP
GO:0048856	anatomical structure development	BP
GO:0048869	cellular developmental process	BP
GO:0050657	nucleic acid transport	BP
GO:0050658	RNA transport	BP
GO:0050681	nuclear androgen receptor binding	MF
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0050810	regulation of steroid biosynthetic process	BP
GO:0050896	response to stimulus	BP
GO:0051030	snRNA transport	BP
GO:0051031	tRNA transport	BP
GO:0051049	regulation of transport	BP
GO:0051050	positive regulation of transport	BP
GO:0051098	regulation of binding	BP
GO:0051099	positive regulation of binding	BP
GO:0051168	nuclear export	BP
GO:0051169	nuclear transport	BP
GO:0051170	import into nucleus	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051173	positive regulation of nitrogen compound metabolic process	BP
GO:0051179	localization	BP
GO:0051222	positive regulation of protein transport	BP
GO:0051223	regulation of protein transport	BP
GO:0051234	establishment of localization	BP
GO:0051236	establishment of RNA localization	BP
GO:0051252	regulation of RNA metabolic process	BP
GO:0051254	positive regulation of RNA metabolic process	BP
GO:0051276	chromosome organization	BP
GO:0051385	response to mineralocorticoid	BP
GO:0051427	hormone receptor binding	MF
GO:0051640	organelle localization	BP
GO:0051641	cellular localization	BP
GO:0051649	establishment of localization in cell	BP
GO:0051656	establishment of organelle localization	BP
GO:0051704	obsolete multi-organism process	BP
GO:0051716	cellular response to stimulus	BP
GO:0055037	recycling endosome	CC
GO:0055086	nucleobase-containing small molecule metabolic process	BP
GO:0060041	retina development in camera-type eye	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0060322	head development	BP
GO:0060341	regulation of cellular localization	BP
GO:0061015	snRNA import into nucleus	BP
GO:0061676	importin-alpha family protein binding	MF
GO:0062012	regulation of small molecule metabolic process	BP
GO:0065007	biological regulation	BP
GO:0065009	regulation of molecular function	BP
GO:0070013	intracellular organelle lumen	CC
GO:0070201	regulation of establishment of protein localization	BP
GO:0070727	cellular macromolecule localization	BP
GO:0070883	pre-miRNA binding	MF
GO:0070887	cellular response to chemical stimulus	BP
GO:0071166	ribonucleoprotein complex localization	BP
GO:0071310	cellular response to organic substance	BP
GO:0071383	cellular response to steroid hormone stimulus	BP
GO:0071384	cellular response to corticosteroid stimulus	BP
GO:0071389	cellular response to mineralocorticoid stimulus	BP
GO:0071396	cellular response to lipid	BP
GO:0071407	cellular response to organic cyclic compound	BP
GO:0071426	obsolete ribonucleoprotein complex export from nucleus	BP
GO:0071428	obsolete rRNA-containing ribonucleoprotein complex export from nucleus	BP
GO:0071431	obsolete tRNA-containing ribonucleoprotein complex export from nucleus	BP
GO:0071495	cellular response to endogenous stimulus	BP
GO:0071702	organic substance transport	BP
GO:0071704	organic substance metabolic process	BP
GO:0071705	nitrogen compound transport	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0072521	purine-containing compound metabolic process	BP
GO:0072594	establishment of protein localization to organelle	BP
GO:0075733	intracellular transport of virus	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0090087	regulation of peptide transport	BP
GO:0090181	regulation of cholesterol metabolic process	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0090316	positive regulation of intracellular protein transport	BP
GO:0097064	ncRNA export from nucleus	BP
GO:0097159	organic cyclic compound binding	MF
GO:0097223	obsolete sperm part	CC
GO:0097367	carbohydrate derivative binding	MF
GO:0097708	intracellular vesicle	CC
GO:0097729	9+2 motile cilium	CC
GO:0098813	nuclear chromosome segregation	BP
GO:0106118	regulation of sterol biosynthetic process	BP
GO:0120025	plasma membrane bounded cell projection	CC
GO:0140014	mitotic nuclear division	BP
GO:0140104	molecular carrier activity	MF
GO:0140110	transcription regulator activity	MF
GO:0140142	nucleocytoplasmic carrier activity	MF
GO:1901068	guanosine-containing compound metabolic process	BP
GO:1901135	carbohydrate derivative metabolic process	BP
GO:1901265	nucleoside phosphate binding	MF
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901363	heterocyclic compound binding	MF
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901657	glycosyl compound metabolic process	BP
GO:1902570	protein localization to nucleolus	BP
GO:1902579	obsolete multi-organism localization	BP
GO:1902680	positive regulation of RNA biosynthetic process	BP
GO:1902850	microtubule cytoskeleton organization involved in mitosis	BP
GO:1902930	regulation of alcohol biosynthetic process	BP
GO:1903047	mitotic cell cycle process	BP
GO:1903506	regulation of nucleic acid-templated transcription	BP
GO:1903508	positive regulation of nucleic acid-templated transcription	BP
GO:1903827	regulation of protein localization	BP
GO:1903829	positive regulation of protein localization	BP
GO:1904951	positive regulation of establishment of protein localization	BP
GO:1990904	ribonucleoprotein complex	CC
GO:2000112	regulation of cellular macromolecule biosynthetic process	BP
GO:2001141	regulation of RNA biosynthetic process	BP

KEGG Term	Name	Description
map03013	RNA transport	RNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) via mobile export receptors. The majority of RNAs, such as tRNAs, rRNAs, and U snRNAs, are transported by specific export receptors, which belong to the karyopherin-beta family proteins. A feature of karyopherins is their regulation by the small GTPase Ran. However, general mRNA export is mechanistically different. Nuclear export of mRNAs is functionally coupled to different steps in gene expression processes, such as transcription, splicing, 3'-end formation and even translation.
map03008	Ribosome biogenesis in eukaryotes	Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.