PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	CSS0047831.g View in Genome Browser
Position	Chr13:90166406-90168236 (-) 1830bp
Gene Type	gene
Gene Description (Protein Product)	Pre-mRNA-splicing factor ATP-dependent RNA helicase
Organism	Camellia sinensis
Also AS	AT2G35340

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	CSS0048083.g U2 small nuclear ribonucleoprotein CSS0048356.g Small nuclear ribonucleoprotein CSS0050146.g U4 U6 small nuclear ribonucleoprotein
Regulatory gene	CSS0001450.g NAC domain-containing protein 21 CSS0001552.g NAC domain-containing protein CSS0002515.g NAC domain-containing protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

KEGG Term	Name	Description
map03040	Spliceosome	After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.