PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	CSS0048817.g View in Genome Browser
Position	Chr7:98703265-98704074 (+) 809bp
Gene Type	gene
Gene Description (Protein Product)	Small nuclear ribonucleoprotein-associated protein
Organism	Camellia sinensis
Also AS	AT5G44500

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	CSS0049508.g RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CSS0050146.g U4 U6 small nuclear ribonucleoprotein CSS0048961.g U1 small nuclear ribonucleoprotein 70
Regulatory gene	CSS0004712.g GAGA binding protein-like family CSS0007067.g Protein BASIC PENTACYSTEINE6-like CSS0008658.g Protein BASIC PENTACYSTEINE2-like

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

KEGG Term	Name	Description
map03040	Spliceosome	After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.