PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	geneMaker00000019 View in Genome Browser
Position	GWHBGXC00000004:5709234-5712363 (+) 3129bp
Gene Type	gene
Gene Description (Protein Product)	Cytochrome c6
Organism	Cinnamomum camphora
Also AS	AT5G45040

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	geneMaker00015737 L-galactono-1;4-lactone dehydrogenase geneMaker00002244 thiol-disulfide oxidoreductase geneMaker00022318 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
Regulatory gene	geneMaker00000164 MADS-box transcription factor geneMaker00001778 Agamous-like MADS-box protein AGL9 homolog geneMaker00003439 ethylene-responsive transcription factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

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Pathway

KEGG Term	Name	Description
map01100	Metabolic pathways	-
map00195	Photosynthesis	Photosynthesis in green plants and specialized bacteria is the process of utilizing light energy to synthesize organic compounds from carbon dioxide and water. It consists of the light dependent part (light reaction) and the light independent part (dark reaction, carbon fixation). The light reaction takes place in thylakoid, a membrane-bound compartment inside chloroplasts and cyanobacteria. The light energy is used by photosystems I and II to generate proton motive force and reducing power (NADPH or NADH). The proton motive force is used by ATP synthase to generate ATP, essentially in the same way as the mitochondrial respiratory chain. The supplies of ATP and NAD(P)H are then used to fix carbon dioxide.