PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	geneMaker00012854 View in Genome Browser
Position	GWHBGXC00000003:15914685-15916853 (-) 2168bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the small heat shock protein (HSP20) family
Organism	Cinnamomum camphora
Also AS	AT1G52560

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	geneMaker00015072 Signal recognition particle 43 kDa protein geneMaker00018054 Shikimate kinase geneMaker00027376 -
Regulatory gene	geneMaker00000164 MADS-box transcription factor geneMaker00000573 WRKY Transcription Factor geneMaker00001778 Agamous-like MADS-box protein AGL9 homolog

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000302	response to reactive oxygen species	BP
GO:0006950	response to stress	BP
GO:0006979	response to oxidative stress	BP
GO:0008150	biological_process	BP
GO:0009266	response to temperature stimulus	BP
GO:0009314	response to radiation	BP
GO:0009408	response to heat	BP
GO:0009416	response to light stimulus	BP
GO:0009628	response to abiotic stimulus	BP
GO:0009636	response to toxic substance	BP
GO:0009642	response to light intensity	BP
GO:0009644	response to high light intensity	BP
GO:0010035	response to inorganic substance	BP
GO:0042221	response to chemical	BP
GO:0042493	response to xenobiotic stimulus	BP
GO:0042542	response to hydrogen peroxide	BP
GO:0046677	response to antibiotic	BP
GO:0050896	response to stimulus	BP
GO:1901700	response to oxygen-containing compound	BP

KEGG Term	Name	Description
map04141	Protein processing in endoplasmic reticulum	The endoplasmic reticulum (ER) is a subcellular organelle where proteins are folded with the help of lumenal chaperones. Newly synthesized peptides enter the ER via the sec61 pore and are glycosylated. Correctly folded proteins are packaged into transport vesicles that shuttle them to the Golgi complex. Misfolded proteins are retained within the ER lumen in complex with molecular chaperones. Proteins that are terminally misfolded bind to BiP and are directed toward degradation through the proteasome in a process called ER-associated degradation (ERAD). Accumulation of misfolded proteins in the ER causes ER stress and activates a signaling pathway called the unfolded protein response (UPR). In certain severe situations, however, the protective mechanisms activated by the UPR are not sufficient to restore normal ER function and cells die by apoptosis.