Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
geneMaker00015907
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Position
GWHBGXC00000001:12256497-12265676 (+)
9179bp
Gene Type
gene
Gene Description (Protein Product)
Belongs to the AAA ATPase family
Organism
Cinnamomum camphora
Also AS AT3G27120

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
geneMaker00024459 Domain of unknown function (DUF4487)
geneMaker00025814 Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Unwinds duplex DNA. Component of the meiotic recombination pathway. Seems to play a role in mediating chromosome homology search; chromosome pairing and synapsis at early stages and probably chromosome crossing-over at later stages in meiosis. Probably is involved in the repair of meiotic double strand breaks (DBSs) and in homologous recombination
geneMaker00018047 DEAD DEAH box RNA helicase family protein
Regulatory gene
geneMaker00000164 MADS-box transcription factor
geneMaker00001778 Agamous-like MADS-box protein AGL9 homolog
geneMaker00003711 AP2-like ethylene-responsive transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0000018 regulation of DNA recombination BP
GO:0000228 nuclear chromosome CC
GO:0000280 nuclear division BP
GO:0000287 magnesium ion binding MF
GO:0001503 ossification BP
GO:0001649 osteoblast differentiation BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005694 chromosome CC
GO:0005737 cytoplasm CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006163 purine nucleotide metabolic process BP
GO:0006282 regulation of DNA repair BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006753 nucleoside phosphate metabolic process BP
GO:0006793 phosphorus metabolic process BP
GO:0006796 phosphate-containing compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006996 organelle organization BP
GO:0007049 cell cycle BP
GO:0007140 male meiotic nuclear division BP
GO:0007276 gamete generation BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008283 cell population proliferation BP
GO:0009117 nucleotide metabolic process BP
GO:0009123 nucleoside monophosphate metabolic process BP
GO:0009126 purine nucleoside monophosphate metabolic process BP
GO:0009141 nucleoside triphosphate metabolic process BP
GO:0009144 purine nucleoside triphosphate metabolic process BP
GO:0009150 purine ribonucleotide metabolic process BP
GO:0009161 ribonucleoside monophosphate metabolic process BP
GO:0009167 purine ribonucleoside monophosphate metabolic process BP
GO:0009199 ribonucleoside triphosphate metabolic process BP
GO:0009205 purine ribonucleoside triphosphate metabolic process BP
GO:0009259 ribonucleotide metabolic process BP
GO:0009314 response to radiation BP
GO:0009628 response to abiotic stimulus BP
GO:0009892 negative regulation of metabolic process BP
GO:0009987 cellular process BP
GO:0010212 response to ionizing radiation BP
GO:0010520 regulation of reciprocal meiotic recombination BP
GO:0010564 regulation of cell cycle process BP
GO:0010569 regulation of double-strand break repair via homologous recombination BP
GO:0010605 negative regulation of macromolecule metabolic process BP
GO:0010639 negative regulation of organelle organization BP
GO:0010941 regulation of cell death BP
GO:0010948 negative regulation of cell cycle process BP
GO:0016043 cellular component organization BP
GO:0016787 hydrolase activity MF
GO:0017144 xenobiotic metabolic process BP
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019637 organophosphate metabolic process BP
GO:0019693 ribose phosphate metabolic process BP
GO:0019953 sexual reproduction BP
GO:0022402 cell cycle process BP
GO:0022412 cellular process involved in reproduction in multicellular organism BP
GO:0022414 reproductive process BP
GO:0030154 cell differentiation BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031324 negative regulation of cellular metabolic process BP
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032504 multicellular organism reproduction BP
GO:0033043 regulation of organelle organization BP
GO:0033687 osteoblast proliferation BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0040020 regulation of meiotic nuclear division BP
GO:0042981 regulation of apoptotic process BP
GO:0043066 negative regulation of apoptotic process BP
GO:0043067 regulation of programmed cell death BP
GO:0043069 negative regulation of programmed cell death BP
GO:0043167 ion binding MF
GO:0043169 cation binding MF
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044281 small molecule metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0044703 multi-organism reproductive process BP
GO:0045128 negative regulation of reciprocal meiotic recombination BP
GO:0045786 negative regulation of cell cycle BP
GO:0045835 negative regulation of meiotic nuclear division BP
GO:0045910 negative regulation of DNA recombination BP
GO:0045934 negative regulation of nucleobase-containing compound metabolic process BP
GO:0046034 ATP metabolic process BP
GO:0046483 heterocycle metabolic process BP
GO:0046872 metal ion binding MF
GO:0048232 male gamete generation BP
GO:0048285 organelle fission BP
GO:0048471 perinuclear region of cytoplasm CC
GO:0048519 negative regulation of biological process BP
GO:0048523 negative regulation of cellular process BP
GO:0048583 regulation of response to stimulus BP
GO:0048609 multicellular organismal reproductive process BP
GO:0048869 cellular developmental process BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051052 regulation of DNA metabolic process BP
GO:0051053 negative regulation of DNA metabolic process BP
GO:0051128 regulation of cellular component organization BP
GO:0051129 negative regulation of cellular component organization BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051172 negative regulation of nitrogen compound metabolic process BP
GO:0051321 meiotic cell cycle BP
GO:0051445 regulation of meiotic cell cycle BP
GO:0051447 negative regulation of meiotic cell cycle BP
GO:0051704 obsolete multi-organism process BP
GO:0051716 cellular response to stimulus BP
GO:0051726 regulation of cell cycle BP
GO:0051783 regulation of nuclear division BP
GO:0051784 negative regulation of nuclear division BP
GO:0055086 nucleobase-containing small molecule metabolic process BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0060548 negative regulation of cell death BP
GO:0060631 regulation of meiosis I BP
GO:0065007 biological regulation BP
GO:0070013 intracellular organelle lumen CC
GO:0071214 cellular response to abiotic stimulus BP
GO:0071478 cellular response to radiation BP
GO:0071479 cellular response to ionizing radiation BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0072521 purine-containing compound metabolic process BP
GO:0080090 regulation of primary metabolic process BP
GO:0080134 regulation of response to stress BP
GO:0080135 regulation of cellular response to stress BP
GO:0104004 cellular response to environmental stimulus BP
GO:0110029 negative regulation of meiosis I BP
GO:0140013 meiotic nuclear division BP
GO:1901135 carbohydrate derivative metabolic process BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1903046 meiotic cell cycle process BP
GO:2000241 regulation of reproductive process BP
GO:2000242 negative regulation of reproductive process BP
GO:2000779 regulation of double-strand break repair BP
GO:2001020 regulation of response to DNA damage stimulus BP