PPGR - Gene Detail

Basic Information

Gene ID	geneMaker00016779 View in Genome Browser
Position	GWHBGXC00000006:34819159-34821085 (-) 1926bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the heat shock protein 70 family
Organism	Cinnamomum camphora
Also AS	AT5G28540

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

geneMaker00018164 Component of the Mediator complex; a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors

geneMaker00022580 mediator of RNA polymerase II transcription subunit

geneMaker00016932 mediator of RNA polymerase II transcription subunit

Regulatory gene

geneMaker00000164 MADS-box transcription factor

geneMaker00000995 Transcription factor

geneMaker00001327 Transcription factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0000902	cell morphogenesis	BP
GO:0000904	cell morphogenesis involved in differentiation	BP
GO:0003006	developmental process involved in reproduction	BP
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005654	nucleoplasm	CC
GO:0005737	cytoplasm	CC
GO:0005783	endoplasmic reticulum	CC
GO:0005788	endoplasmic reticulum lumen	CC
GO:0008150	biological_process	BP
GO:0009653	anatomical structure morphogenesis	BP
GO:0009826	unidimensional cell growth	BP
GO:0009856	pollination	BP
GO:0009860	pollen tube growth	BP
GO:0009932	cell tip growth	BP
GO:0009987	cellular process	BP
GO:0012505	endomembrane system	CC
GO:0016043	cellular component organization	BP
GO:0016049	cell growth	BP
GO:0016592	mediator complex	CC
GO:0022414	reproductive process	BP
GO:0030154	cell differentiation	BP
GO:0031974	membrane-enclosed lumen	CC
GO:0031981	nuclear lumen	CC
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0032989	cellular component morphogenesis	BP
GO:0032991	protein-containing complex	CC
GO:0040007	growth	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044432	obsolete endoplasmic reticulum part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044451	obsolete nucleoplasm part	CC
GO:0044464	obsolete cell part	CC
GO:0044706	multi-multicellular organism process	BP
GO:0048468	cell development	BP
GO:0048588	developmental cell growth	BP
GO:0048589	developmental growth	BP
GO:0048856	anatomical structure development	BP
GO:0048868	pollen tube development	BP
GO:0048869	cellular developmental process	BP
GO:0051704	obsolete multi-organism process	BP
GO:0060560	developmental growth involved in morphogenesis	BP
GO:0070013	intracellular organelle lumen	CC
GO:0071840	cellular component organization or biogenesis	BP

KEGG Term	Name	Description
map04141	Protein processing in endoplasmic reticulum	The endoplasmic reticulum (ER) is a subcellular organelle where proteins are folded with the help of lumenal chaperones. Newly synthesized peptides enter the ER via the sec61 pore and are glycosylated. Correctly folded proteins are packaged into transport vesicles that shuttle them to the Golgi complex. Misfolded proteins are retained within the ER lumen in complex with molecular chaperones. Proteins that are terminally misfolded bind to BiP and are directed toward degradation through the proteasome in a process called ER-associated degradation (ERAD). Accumulation of misfolded proteins in the ER causes ER stress and activates a signaling pathway called the unfolded protein response (UPR). In certain severe situations, however, the protective mechanisms activated by the UPR are not sufficient to restore normal ER function and cells die by apoptosis.
map03060	Protein export	The protein export is the active transport of proteins from the cytoplasm to the exterior of the cell, or to the periplasmic compartment in Gram-negative bacteria. The sec dependent pathway is the general protein export system that transports newly synthesized proteins into or across the cell membrane. The translocation channel is formed from a conserved trimeric membrane protein complex, called the Sec61/SecY complex. The twin-arginine translocation (Tat) pathway is another protein transport system that transports folded proteins in bacteria, archaea, and chloroplasts. Many Tat systems comprise three functionally different membrane proteins, TatA, TatB, and TatC, but TatA and TatE seem to have overlapping functions, with TatA having by far the more important role.