Basic Information
Gene ID
geneMaker00021480
Position
GWHBGXC00000002:59914157-59920348 (+)
6191bp
Gene Type
gene
Gene Description (Protein Product)
Small ubiquitin-related modifier 2
Organism
Also AS AT5G55160

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
geneMaker00025128 Structural maintenance of chromosomes protein
geneMaker00025495 Helicase associated domain (HA2) Add an annotation
geneMaker00029698 U2 small nuclear ribonucleoprotein
Regulatory gene
geneMaker00000164 MADS-box transcription factor
geneMaker00001778 Agamous-like MADS-box protein AGL9 homolog
geneMaker00006659 Protein BASIC PENTACYSTEINE2-like

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Term Name Description
map03013 RNA transport RNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) via mobile export receptors. The majority of RNAs, such as tRNAs, rRNAs, and U snRNAs, are transported by specific export receptors, which belong to the karyopherin-beta family proteins. A feature of karyopherins is their regulation by the small GTPase Ran. However, general mRNA export is mechanistically different. Nuclear export of mRNAs is functionally coupled to different steps in gene expression processes, such as transcription, splicing, 3'-end formation and even translation.