Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
geneMaker00021606
View in Genome Browser
Position
GWHBGXC00000001:75258506-75279172 (-)
20666bp
Gene Type
gene
Gene Description (Protein Product)
Brefeldin A-inhibited guanine nucleotide-exchange protein
Organism
Cinnamomum camphora
Also AS AT4G38200

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
geneMaker00029027 Brefeldin A-inhibited guanine nucleotide-exchange protein
geneMaker00028994 Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family
geneMaker00025257 AMSH-like ubiquitin thioesterase
Regulatory gene
geneMaker00000144 homeobox-leucine zipper protein
geneMaker00000546 Zinc finger protein
geneMaker00000601 radialis-like

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000139 Golgi membrane CC
GO:0003674 molecular_function MF
GO:0005085 guanyl-nucleotide exchange factor activity MF
GO:0005086 guanyl-nucleotide exchange factor activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0005730 nucleolus CC
GO:0005737 cytoplasm CC
GO:0005794 Golgi apparatus CC
GO:0005802 trans-Golgi network CC
GO:0005829 cytosol CC
GO:0006810 transport BP
GO:0006887 exocytosis BP
GO:0006996 organelle organization BP
GO:0007030 Golgi organization BP
GO:0008064 regulation of actin polymerization or depolymerization BP
GO:0008092 cytoskeletal protein binding MF
GO:0008150 biological_process BP
GO:0009507 chloroplast CC
GO:0009536 plastid CC
GO:0009889 regulation of biosynthetic process BP
GO:0009891 positive regulation of biosynthetic process BP
GO:0009893 positive regulation of metabolic process BP
GO:0009987 cellular process BP
GO:0010256 endomembrane system organization BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010557 positive regulation of macromolecule biosynthetic process BP
GO:0010559 regulation of glycoprotein biosynthetic process BP
GO:0010560 positive regulation of glycoprotein biosynthetic process BP
GO:0010604 positive regulation of macromolecule metabolic process BP
GO:0010639 negative regulation of organelle organization BP
GO:0012505 endomembrane system CC
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0016192 vesicle-mediated transport BP
GO:0016363 nuclear matrix CC
GO:0017022 myosin binding MF
GO:0019222 regulation of metabolic process BP
GO:0019899 enzyme binding MF
GO:0030532 small nuclear ribonucleoprotein complex CC
GO:0030832 regulation of actin filament length BP
GO:0030833 regulation of actin filament polymerization BP
GO:0030837 negative regulation of actin filament polymerization BP
GO:0031090 organelle membrane CC
GO:0031323 regulation of cellular metabolic process BP
GO:0031325 positive regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0031328 positive regulation of cellular biosynthetic process BP
GO:0031333 negative regulation of protein-containing complex assembly BP
GO:0031399 regulation of protein modification process BP
GO:0031401 positive regulation of protein modification process BP
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0031984 organelle subcompartment CC
GO:0032268 regulation of protein metabolic process BP
GO:0032270 positive regulation of protein metabolic process BP
GO:0032271 regulation of protein polymerization BP
GO:0032272 negative regulation of protein polymerization BP
GO:0032535 regulation of cellular component size BP
GO:0032588 trans-Golgi network membrane CC
GO:0032878 regulation of establishment or maintenance of cell polarity BP
GO:0032940 secretion by cell BP
GO:0032956 regulation of actin cytoskeleton organization BP
GO:0032970 regulation of actin filament-based process BP
GO:0032991 protein-containing complex CC
GO:0033043 regulation of organelle organization BP
GO:0034237 protein kinase A regulatory subunit binding MF
GO:0034260 negative regulation of GTPase activity BP
GO:0034399 nuclear periphery CC
GO:0043086 negative regulation of catalytic activity BP
GO:0043087 regulation of GTPase activity BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043254 regulation of protein-containing complex assembly BP
GO:0044087 regulation of cellular component biogenesis BP
GO:0044092 negative regulation of molecular function BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044431 obsolete Golgi apparatus part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0046903 secretion BP
GO:0048471 perinuclear region of cytoplasm CC
GO:0048518 positive regulation of biological process BP
GO:0048519 negative regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048523 negative regulation of cellular process BP
GO:0048583 regulation of response to stimulus BP
GO:0048584 positive regulation of response to stimulus BP
GO:0050789 regulation of biological process BP
GO:0050790 regulation of catalytic activity BP
GO:0050794 regulation of cellular process BP
GO:0051018 protein kinase A binding MF
GO:0051020 GTPase binding MF
GO:0051128 regulation of cellular component organization BP
GO:0051129 negative regulation of cellular component organization BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051173 positive regulation of nitrogen compound metabolic process BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051246 regulation of protein metabolic process BP
GO:0051247 positive regulation of protein metabolic process BP
GO:0051336 regulation of hydrolase activity BP
GO:0051346 negative regulation of hydrolase activity BP
GO:0051493 regulation of cytoskeleton organization BP
GO:0051494 negative regulation of cytoskeleton organization BP
GO:0060049 regulation of protein glycosylation BP
GO:0060050 positive regulation of protein glycosylation BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0061041 regulation of wound healing BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0065009 regulation of molecular function BP
GO:0070013 intracellular organelle lumen CC
GO:0071840 cellular component organization or biogenesis BP
GO:0080090 regulation of primary metabolic process BP
GO:0080134 regulation of response to stress BP
GO:0090066 regulation of anatomical structure size BP
GO:0090283 obsolete regulation of protein glycosylation in Golgi BP
GO:0090284 obsolete positive regulation of protein glycosylation in Golgi BP
GO:0090303 positive regulation of wound healing BP
GO:0098588 bounding membrane of organelle CC
GO:0098772 molecular function regulator activity MF
GO:0098791 Golgi apparatus subcompartment CC
GO:0110053 regulation of actin filament organization BP
GO:0120114 Sm-like protein family complex CC
GO:1902903 regulation of supramolecular fiber organization BP
GO:1902904 negative regulation of supramolecular fiber organization BP
GO:1903018 regulation of glycoprotein metabolic process BP
GO:1903020 positive regulation of glycoprotein metabolic process BP
GO:1903034 regulation of response to wounding BP
GO:1903036 positive regulation of response to wounding BP
GO:1990904 ribonucleoprotein complex CC
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2000114 regulation of establishment of cell polarity BP
KEGG Term Name Description
map04144 Endocytosis Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.