Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
geneMaker00024643
View in Genome Browser
Position
GWHBGXC00000007:50469104-50469901 (-)
797bp
Gene Type
gene
Gene Description (Protein Product)
Aconitase C-terminal domain
Organism
Cinnamomum camphora
Also AS AT2G43090

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
geneMaker00026407 Belongs to the pyruvate kinase family
geneMaker00024929 malic enzyme
geneMaker00028842 Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen
Regulatory gene
geneMaker00000027 Belongs to the GRAS family
geneMaker00001564 Belongs to the GRAS family
geneMaker00001579 Belongs to the GRAS family

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0003861 3-isopropylmalate dehydratase activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0006082 organic acid metabolic process BP
GO:0006520 amino acid metabolic process BP
GO:0006551 leucine metabolic process BP
GO:0006790 sulfur compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006950 response to stress BP
GO:0006970 response to osmotic stress BP
GO:0006996 organelle organization BP
GO:0007275 multicellular organism development BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008652 amino acid biosynthetic process BP
GO:0009058 biosynthetic process BP
GO:0009081 branched-chain amino acid metabolic process BP
GO:0009082 branched-chain amino acid biosynthetic process BP
GO:0009098 leucine biosynthetic process BP
GO:0009507 chloroplast CC
GO:0009532 plastid stroma CC
GO:0009536 plastid CC
GO:0009570 chloroplast stroma CC
GO:0009628 response to abiotic stimulus BP
GO:0009651 response to salt stress BP
GO:0009657 plastid organization BP
GO:0009658 chloroplast organization BP
GO:0009987 cellular process BP
GO:0016043 cellular component organization BP
GO:0016053 organic acid biosynthetic process BP
GO:0016143 S-glycoside metabolic process BP
GO:0016144 S-glycoside biosynthetic process BP
GO:0016829 lyase activity MF
GO:0016835 carbon-oxygen lyase activity MF
GO:0016836 hydro-lyase activity MF
GO:0019748 secondary metabolic process BP
GO:0019752 carboxylic acid metabolic process BP
GO:0019757 glycosinolate metabolic process BP
GO:0019758 glycosinolate biosynthetic process BP
GO:0019760 glucosinolate metabolic process BP
GO:0019761 glucosinolate biosynthetic process BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043436 oxoacid metabolic process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044272 sulfur compound biosynthetic process BP
GO:0044281 small molecule metabolic process BP
GO:0044283 small molecule biosynthetic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044434 obsolete chloroplast part CC
GO:0044435 obsolete plastid part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0044550 secondary metabolite biosynthetic process BP
GO:0046394 carboxylic acid biosynthetic process BP
GO:0048229 gametophyte development BP
GO:0048856 anatomical structure development BP
GO:0050896 response to stimulus BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:1901135 carbohydrate derivative metabolic process BP
GO:1901137 carbohydrate derivative biosynthetic process BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901566 organonitrogen compound biosynthetic process BP
GO:1901576 organic substance biosynthetic process BP
GO:1901605 alpha-amino acid metabolic process BP
GO:1901607 alpha-amino acid biosynthetic process BP
GO:1901657 glycosyl compound metabolic process BP
GO:1901659 glycosyl compound biosynthetic process BP
KEGG Term Name Description
map01110 Biosynthesis of secondary metabolites -
map01110 Biosynthesis of secondary metabolites -
map01100 Metabolic pathways -
map01100 Metabolic pathways -
map00966 Glucosinolate biosynthesis Glucosinolates are biologically active secondary metabolites found in Brassicaceae (mustard family) and related families.These compounds are genetically variable within plant species and used as natural pesticides, such as against insect herbivores. All glucosinolates share a common structure consisting of a beta-thioglucose moiety, a sulfonated oxime moiety, and a variable aglycone side chain derived from an alpha-amino acid. Genes encoding glucosinolate biosynthetic enzymes have been identified in Arabidopsis thaliana by genetic polymorphisms and loss-of-function mutations. This map shows examples of side chain elongation in methionine-derived glucosinolates and the core pathway for biosynthesis of glucosinolates from amino acids.
map00660 C5-Branched dibasic acid metabolism -
map00290 Valine, leucine and isoleucine biosynthesis -
map00290 Valine, leucine and isoleucine biosynthesis -