PPGR - Gene Detail

Basic Information

Gene ID	geneMaker00025443 View in Genome Browser
Position	GWHBGXC00000010:17736800-17844377 (+) 107577bp
Gene Type	gene
Gene Description (Protein Product)	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
Organism	Cinnamomum camphora
Also AS	AT1G29940

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

geneMaker00025610 DNA-directed RNA polymerases I; II; and III

geneMaker00027181 DNA-directed RNA polymerases I and III subunit

geneMaker00025749 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000428	DNA-directed RNA polymerase complex	CC
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005730	nucleolus	CC
GO:0005736	RNA polymerase I complex	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006351	DNA-templated transcription	BP
GO:0006360	transcription by RNA polymerase I	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0007275	multicellular organism development	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009059	macromolecule biosynthetic process	BP
GO:0009553	embryo sac development	BP
GO:0009561	megagametogenesis	BP
GO:0009987	cellular process	BP
GO:0010467	gene expression	BP
GO:0016070	RNA metabolic process	BP
GO:0016740	transferase activity	MF
GO:0016772	transferase activity, transferring phosphorus-containing groups	MF
GO:0016779	nucleotidyltransferase activity	MF
GO:0018130	heterocycle biosynthetic process	BP
GO:0019438	aromatic compound biosynthetic process	BP
GO:0030880	RNA polymerase complex	CC
GO:0031974	membrane-enclosed lumen	CC
GO:0031981	nuclear lumen	CC
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0032774	RNA biosynthetic process	BP
GO:0032991	protein-containing complex	CC
GO:0034062	5'-3' RNA polymerase activity	MF
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034645	cellular macromolecule biosynthetic process	BP
GO:0034654	nucleobase-containing compound biosynthetic process	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044452	obsolete nucleolar part	CC
GO:0044464	obsolete cell part	CC
GO:0046483	heterocycle metabolic process	BP
GO:0048229	gametophyte development	BP
GO:0048856	anatomical structure development	BP
GO:0055029	nuclear DNA-directed RNA polymerase complex	CC
GO:0061695	transferase complex, transferring phosphorus-containing groups	CC
GO:0070013	intracellular organelle lumen	CC
GO:0071704	organic substance metabolic process	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0097659	nucleic acid-templated transcription	BP
GO:0097747	RNA polymerase activity	MF
GO:0140098	catalytic activity, acting on RNA	MF
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901362	organic cyclic compound biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1902494	catalytic complex	CC
GO:1990234	transferase complex	CC

KEGG Term	Name	Description
map03020	RNA polymerase	-