Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
geneMaker00028443
View in Genome Browser
Position
GWHBGXC00000004:17476541-17483431 (+)
6890bp
Gene Type
gene
Gene Description (Protein Product)
VIN3-like protein 2
Organism
Cinnamomum camphora
Also AS AT4G30200

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
geneMaker00029498 Zinc finger; C2H2 type
geneMaker00028949 Belongs to the iron ascorbate-dependent oxidoreductase family
Regulatory gene
geneMaker00002423 transcription factor
geneMaker00010243 transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0001666 response to hypoxia BP
GO:0003674 molecular_function MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0005677 chromatin silencing complex CC
GO:0005911 cell-cell junction CC
GO:0006950 response to stress BP
GO:0007623 circadian rhythm BP
GO:0008150 biological_process BP
GO:0009266 response to temperature stimulus BP
GO:0009409 response to cold BP
GO:0009506 plasmodesma CC
GO:0009628 response to abiotic stimulus BP
GO:0009892 negative regulation of metabolic process BP
GO:0009893 positive regulation of metabolic process BP
GO:0009987 cellular process BP
GO:0010048 vernalization response BP
GO:0010468 regulation of gene expression BP
GO:0010604 positive regulation of macromolecule metabolic process BP
GO:0010605 negative regulation of macromolecule metabolic process BP
GO:0010629 negative regulation of gene expression BP
GO:0010638 positive regulation of organelle organization BP
GO:0016604 nuclear body CC
GO:0016607 nuclear speck CC
GO:0017053 transcription repressor complex CC
GO:0019222 regulation of metabolic process BP
GO:0030054 cell junction CC
GO:0031056 regulation of histone modification BP
GO:0031058 positive regulation of histone modification BP
GO:0031060 regulation of histone methylation BP
GO:0031062 positive regulation of histone methylation BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031325 positive regulation of cellular metabolic process BP
GO:0031399 regulation of protein modification process BP
GO:0031401 positive regulation of protein modification process BP
GO:0031519 PcG protein complex CC
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032268 regulation of protein metabolic process BP
GO:0032270 positive regulation of protein metabolic process BP
GO:0032501 multicellular organismal process BP
GO:0032922 circadian regulation of gene expression BP
GO:0032991 protein-containing complex CC
GO:0033043 regulation of organelle organization BP
GO:0033044 regulation of chromosome organization BP
GO:0033554 cellular response to stress BP
GO:0035064 methylated histone binding MF
GO:0036293 response to decreased oxygen levels BP
GO:0040029 epigenetic regulation of gene expression BP
GO:0042393 histone binding MF
GO:0042802 identical protein binding MF
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044451 obsolete nucleoplasm part CC
GO:0044464 obsolete cell part CC
GO:0045814 negative regulation of gene expression, epigenetic BP
GO:0048511 rhythmic process BP
GO:0048518 positive regulation of biological process BP
GO:0048519 negative regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048580 regulation of post-embryonic development BP
GO:0048583 regulation of response to stimulus BP
GO:0048587 regulation of short-day photoperiodism, flowering BP
GO:0050789 regulation of biological process BP
GO:0050793 regulation of developmental process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051128 regulation of cellular component organization BP
GO:0051130 positive regulation of cellular component organization BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051173 positive regulation of nitrogen compound metabolic process BP
GO:0051239 regulation of multicellular organismal process BP
GO:0051246 regulation of protein metabolic process BP
GO:0051247 positive regulation of protein metabolic process BP
GO:0051569 regulation of histone H3-K4 methylation BP
GO:0051570 regulation of histone H3-K9 methylation BP
GO:0051571 positive regulation of histone H3-K4 methylation BP
GO:0051574 positive regulation of histone H3-K9 methylation BP
GO:0051716 cellular response to stimulus BP
GO:0055044 symplast CC
GO:0060255 regulation of macromolecule metabolic process BP
GO:0061085 regulation of histone H3-K27 methylation BP
GO:0061087 positive regulation of histone H3-K27 methylation BP
GO:0065007 biological regulation BP
GO:0070013 intracellular organelle lumen CC
GO:0070417 cellular response to cold BP
GO:0070482 response to oxygen levels BP
GO:0080090 regulation of primary metabolic process BP
GO:0090568 transcription repressor complex CC
GO:0140030 modification-dependent protein binding MF
GO:0140034 methylation-dependent protein binding MF
GO:1900109 regulation of histone H3-K9 dimethylation BP
GO:1900111 positive regulation of histone H3-K9 dimethylation BP
GO:1902275 regulation of chromatin organization BP
GO:1905269 positive regulation of chromatin organization BP
GO:2000026 regulation of multicellular organismal development BP
GO:2000028 regulation of photoperiodism, flowering BP
GO:2000241 regulation of reproductive process BP
GO:2001252 positive regulation of chromosome organization BP