Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
geneMaker00028901
View in Genome Browser
Position
GWHBGXC00000002:19547771-19558274 (+)
10503bp
Gene Type
gene
Gene Description (Protein Product)
Destroys radicals which are normally produced within the cells and which are toxic to biological systems
Organism
Cinnamomum camphora
Also AS AT3G10920

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
geneMaker00028924 acid phosphatase
geneMaker00028933 Puromycin-sensitive aminopeptidase
geneMaker00029067 aminopeptidase
Regulatory gene
geneMaker00000144 homeobox-leucine zipper protein
geneMaker00000453 NAC domain-containing protein 21
geneMaker00000590 Transcription factor JUNGBRUNNEN 1-like

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0000302 response to reactive oxygen species BP
GO:0000303 response to superoxide BP
GO:0000305 response to oxygen radical BP
GO:0003006 developmental process involved in reproduction BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004784 superoxide dismutase activity MF
GO:0005488 binding MF
GO:0005507 copper ion binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005739 mitochondrion CC
GO:0005759 mitochondrial matrix CC
GO:0006801 superoxide metabolic process BP
GO:0006950 response to stress BP
GO:0006952 defense response BP
GO:0006970 response to osmotic stress BP
GO:0006979 response to oxidative stress BP
GO:0007275 multicellular organism development BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009605 response to external stimulus BP
GO:0009607 response to biotic stimulus BP
GO:0009617 response to bacterium BP
GO:0009628 response to abiotic stimulus BP
GO:0009636 response to toxic substance BP
GO:0009651 response to salt stress BP
GO:0009790 embryo development BP
GO:0009791 post-embryonic development BP
GO:0009793 embryo development ending in seed dormancy BP
GO:0009838 abscission BP
GO:0009908 flower development BP
GO:0009987 cellular process BP
GO:0010035 response to inorganic substance BP
GO:0010038 response to metal ion BP
GO:0010043 response to zinc ion BP
GO:0010154 fruit development BP
GO:0010227 floral organ abscission BP
GO:0016209 antioxidant activity MF
GO:0016491 oxidoreductase activity MF
GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor MF
GO:0019430 removal of superoxide radicals BP
GO:0022414 reproductive process BP
GO:0031974 membrane-enclosed lumen CC
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0033554 cellular response to stress BP
GO:0034599 cellular response to oxidative stress BP
GO:0034614 cellular response to reactive oxygen species BP
GO:0042221 response to chemical BP
GO:0042742 defense response to bacterium BP
GO:0043167 ion binding MF
GO:0043169 cation binding MF
GO:0043207 response to external biotic stimulus BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0044237 cellular metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044429 obsolete mitochondrial part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0046872 metal ion binding MF
GO:0046914 transition metal ion binding MF
GO:0048316 seed development BP
GO:0048367 shoot system development BP
GO:0048437 floral organ development BP
GO:0048608 reproductive structure development BP
GO:0048731 system development BP
GO:0048856 anatomical structure development BP
GO:0050896 response to stimulus BP
GO:0051704 obsolete multi-organism process BP
GO:0051707 response to other organism BP
GO:0051716 cellular response to stimulus BP
GO:0055114 obsolete oxidation-reduction process BP
GO:0061458 reproductive system development BP
GO:0070013 intracellular organelle lumen CC
GO:0070887 cellular response to chemical stimulus BP
GO:0071450 cellular response to oxygen radical BP
GO:0071451 cellular response to superoxide BP
GO:0072593 reactive oxygen species metabolic process BP
GO:0090567 reproductive shoot system development BP
GO:0097237 cellular response to toxic substance BP
GO:0098542 defense response to other organism BP
GO:0098754 detoxification BP
GO:0098869 cellular oxidant detoxification BP
GO:0099402 plant organ development BP
GO:1901700 response to oxygen-containing compound BP
GO:1901701 cellular response to oxygen-containing compound BP
GO:1990748 cellular detoxification BP
KEGG Term Name Description
map04146 Peroxisome Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.