PPGR - Gene Detail

Basic Information

Gene ID	geneMaker00029040 View in Genome Browser
Position	GWHBGXC00000002:17147245-17162118 (-) 14873bp
Gene Type	gene
Gene Description (Protein Product)	eukaryotic translation initiation factor
Organism	Cinnamomum camphora
Also AS	AT3G60240

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

geneMaker00029294 component of the eukaryotic translation initiation factor 3 (eIF-3) complex; which is involved in protein synthesis of a specialized repertoire of mRNAs and; together with other initiation factors; stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation

geneMaker00029570 May act early in the ethylene signal transduction pathway; possibly as an ethylene receptor; or as a regulator of the pathway

geneMaker00029759 Nuclear-pore anchor

Regulatory gene

geneMaker00006659 Protein BASIC PENTACYSTEINE2-like

geneMaker00018702 Protein BASIC PENTACYSTEINE6-like

geneMaker00025724 Protein BASIC PENTACYSTEINE2-like

Load All Networks

Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0001101	response to acid chemical	BP
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003723	RNA binding	MF
GO:0003729	mRNA binding	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0008150	biological_process	BP
GO:0009605	response to external stimulus	BP
GO:0009607	response to biotic stimulus	BP
GO:0009615	response to virus	BP
GO:0009719	response to endogenous stimulus	BP
GO:0009725	response to hormone	BP
GO:0009737	response to abscisic acid	BP
GO:0010033	response to organic substance	BP
GO:0033993	response to lipid	BP
GO:0042221	response to chemical	BP
GO:0043207	response to external biotic stimulus	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0050896	response to stimulus	BP
GO:0051704	obsolete multi-organism process	BP
GO:0051707	response to other organism	BP
GO:0097159	organic cyclic compound binding	MF
GO:0097305	response to alcohol	BP
GO:1901363	heterocyclic compound binding	MF
GO:1901700	response to oxygen-containing compound	BP