PPGR - Gene Detail

Basic Information

Gene ID	geneMaker00029556 View in Genome Browser
Position	GWHBGXC00000009:47058317-47095515 (+) 37198bp
Gene Type	gene
Gene Description (Protein Product)	Vacuolar protein sorting-associated protein
Organism	Cinnamomum camphora
Also AS	AT4G19490

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

geneMaker00029585 Ribonuclease H protein

geneMaker00029630 AAA domain (Cdc48 subfamily)

geneMaker00029609 Vacuolar protein sorting-associated protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000139	Golgi membrane	CC
GO:0000149	SNARE binding	MF
GO:0000938	GARP complex	CC
GO:0001894	tissue homeostasis	BP
GO:0003674	molecular_function	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005654	nucleoplasm	CC
GO:0005737	cytoplasm	CC
GO:0005794	Golgi apparatus	CC
GO:0005802	trans-Golgi network	CC
GO:0006810	transport	BP
GO:0006892	post-Golgi vesicle-mediated transport	BP
GO:0006896	Golgi to vacuole transport	BP
GO:0006996	organelle organization	BP
GO:0007010	cytoskeleton organization	BP
GO:0007034	vacuolar transport	BP
GO:0007041	lysosomal transport	BP
GO:0008150	biological_process	BP
GO:0009507	chloroplast	CC
GO:0009536	plastid	CC
GO:0009987	cellular process	BP
GO:0012505	endomembrane system	CC
GO:0016020	membrane	CC
GO:0016043	cellular component organization	BP
GO:0016192	vesicle-mediated transport	BP
GO:0016197	endosomal transport	BP
GO:0016482	cytosolic transport	BP
GO:0019905	syntaxin binding	MF
GO:0031090	organelle membrane	CC
GO:0031410	cytoplasmic vesicle	CC
GO:0031974	membrane-enclosed lumen	CC
GO:0031981	nuclear lumen	CC
GO:0031982	vesicle	CC
GO:0031984	organelle subcompartment	CC
GO:0032501	multicellular organismal process	BP
GO:0032588	trans-Golgi network membrane	CC
GO:0032991	protein-containing complex	CC
GO:0040008	regulation of growth	BP
GO:0042147	retrograde transport, endosome to Golgi	BP
GO:0042592	homeostatic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044431	obsolete Golgi apparatus part	CC
GO:0044433	obsolete cytoplasmic vesicle part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0045103	intermediate filament-based process	BP
GO:0045104	intermediate filament cytoskeleton organization	BP
GO:0046907	intracellular transport	BP
GO:0048193	Golgi vesicle transport	BP
GO:0048471	perinuclear region of cytoplasm	CC
GO:0048871	multicellular organismal-level homeostasis	BP
GO:0048872	homeostasis of number of cells	BP
GO:0048873	homeostasis of number of cells within a tissue	BP
GO:0050789	regulation of biological process	BP
GO:0050879	multicellular organismal movement	BP
GO:0050881	musculoskeletal movement	BP
GO:0051179	localization	BP
GO:0051234	establishment of localization	BP
GO:0051641	cellular localization	BP
GO:0051649	establishment of localization in cell	BP
GO:0060052	neurofilament cytoskeleton organization	BP
GO:0060249	anatomical structure homeostasis	BP
GO:0065007	biological regulation	BP
GO:0065008	regulation of biological quality	BP
GO:0070013	intracellular organelle lumen	CC
GO:0071840	cellular component organization or biogenesis	BP
GO:0097708	intracellular vesicle	CC
GO:0098588	bounding membrane of organelle	CC
GO:0098791	Golgi apparatus subcompartment	CC
GO:0099023	vesicle tethering complex	CC