PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	geneMaker00029662 View in Genome Browser
Position	GWHBGXC00000001:63233795-63267302 (+) 33507bp
Gene Type	gene
Gene Description (Protein Product)	Lysosomal
Organism	Cinnamomum camphora
Also AS	AT5G13980

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	geneMaker00029676 glutamyl-tRNA(Gln) amidotransferase subunit A
Regulatory gene	geneMaker00000164 MADS-box transcription factor geneMaker00001778 Agamous-like MADS-box protein AGL9 homolog geneMaker00007025 dof zinc finger protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000323	lytic vacuole	CC
GO:0001775	cell activation	BP
GO:0002252	immune effector process	BP
GO:0002263	cell activation involved in immune response	BP
GO:0002274	myeloid leukocyte activation	BP
GO:0002275	myeloid cell activation involved in immune response	BP
GO:0002283	neutrophil activation involved in immune response	BP
GO:0002366	leukocyte activation involved in immune response	BP
GO:0002376	immune system process	BP
GO:0002443	leukocyte mediated immunity	BP
GO:0002444	myeloid leukocyte mediated immunity	BP
GO:0002446	neutrophil mediated immunity	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	MF
GO:0004559	alpha-mannosidase activity	MF
GO:0005575	cellular_component	CC
GO:0005576	extracellular region	CC
GO:0005615	extracellular space	CC
GO:0005618	cell wall	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005764	lysosome	CC
GO:0005766	primary lysosome	CC
GO:0005773	vacuole	CC
GO:0005774	vacuolar membrane	CC
GO:0005775	vacuolar lumen	CC
GO:0005975	carbohydrate metabolic process	BP
GO:0005996	monosaccharide metabolic process	BP
GO:0006013	mannose metabolic process	BP
GO:0006464	protein modification process	BP
GO:0006517	protein deglycosylation	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006810	transport	BP
GO:0006887	exocytosis	BP
GO:0006955	immune response	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009056	catabolic process	BP
GO:0009100	glycoprotein metabolic process	BP
GO:0009311	oligosaccharide metabolic process	BP
GO:0009313	oligosaccharide catabolic process	BP
GO:0009505	plant-type cell wall	CC
GO:0009987	cellular process	BP
GO:0012505	endomembrane system	CC
GO:0015923	mannosidase activity	MF
GO:0016020	membrane	CC
GO:0016052	carbohydrate catabolic process	BP
GO:0016192	vesicle-mediated transport	BP
GO:0016787	hydrolase activity	MF
GO:0016798	hydrolase activity, acting on glycosyl bonds	MF
GO:0019318	hexose metabolic process	BP
GO:0019538	protein metabolic process	BP
GO:0030141	secretory granule	CC
GO:0030312	external encapsulating structure	CC
GO:0031090	organelle membrane	CC
GO:0031410	cytoplasmic vesicle	CC
GO:0031974	membrane-enclosed lumen	CC
GO:0031982	vesicle	CC
GO:0031983	vesicle lumen	CC
GO:0032940	secretion by cell	BP
GO:0034774	secretory granule lumen	CC
GO:0035578	azurophil granule lumen	CC
GO:0036211	protein modification process	BP
GO:0036230	granulocyte activation	BP
GO:0042119	neutrophil activation	BP
GO:0042582	azurophil granule	CC
GO:0043170	macromolecule metabolic process	BP
GO:0043202	lysosomal lumen	CC
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0043299	leukocyte degranulation	BP
GO:0043312	neutrophil degranulation	BP
GO:0043412	macromolecule modification	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044421	obsolete extracellular region part	CC
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044433	obsolete cytoplasmic vesicle part	CC
GO:0044437	obsolete vacuolar part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0045055	regulated exocytosis	BP
GO:0045321	leukocyte activation	BP
GO:0046903	secretion	BP
GO:0048046	apoplast	CC
GO:0050896	response to stimulus	BP
GO:0051179	localization	BP
GO:0051234	establishment of localization	BP
GO:0060205	cytoplasmic vesicle lumen	CC
GO:0070013	intracellular organelle lumen	CC
GO:0071704	organic substance metabolic process	BP
GO:0071944	cell periphery	CC
GO:0097708	intracellular vesicle	CC
GO:0098588	bounding membrane of organelle	CC
GO:0098805	membrane	CC
GO:0099503	secretory vesicle	CC
GO:1901135	carbohydrate derivative metabolic process	BP
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901575	organic substance catabolic process	BP

KEGG Term	Name	Description
map00511	Other glycan degradation	-