Basic Information
Gene ID
CKAN_00854800.v3
Position
CKAN.scaff0003:30278570-30284730 (-)
6160bp
Gene Type
gene
Gene Description (Protein Product)
Small ubiquitin-related modifier 2
Organism
Also AS AT5G55160

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
CKAN_01174100.v3 Belongs to the ubiquitin-conjugating enzyme family
CKAN_01275500.v3 Structural maintenance of chromosomes protein
CKAN_01679700.v3 Helicase associated domain (HA2) Add an annotation
Regulatory gene
CKAN_00109600.v3 MADS-box protein
CKAN_00139800.v3 transcription factor
CKAN_00180600.v3 transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03013 RNA transport RNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) via mobile export receptors. The majority of RNAs, such as tRNAs, rRNAs, and U snRNAs, are transported by specific export receptors, which belong to the karyopherin-beta family proteins. A feature of karyopherins is their regulation by the small GTPase Ran. However, general mRNA export is mechanistically different. Nuclear export of mRNAs is functionally coupled to different steps in gene expression processes, such as transcription, splicing, 3'-end formation and even translation.