Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
CKAN_01184700.v3
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Position
CKAN.scaff0004:25845280-25846164 (+)
884bp
Gene Type
gene
Gene Description (Protein Product)
Polygalacturonase
Organism
Cinnamomum kanehirae
Also AS AT3G15720

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
CKAN_02518100.v3 Acts in the modification of cell walls via demethylesterification of cell wall pectin
CKAN_02692900.v3 Pectate lyase
CKAN_01645100.v3 Acts in the modification of cell walls via demethylesterification of cell wall pectin
Regulatory gene
CKAN_00136200.v3 NAC transcription factor
CKAN_00139800.v3 transcription factor
CKAN_00180600.v3 transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0005575 cellular_component CC
GO:0005618 cell wall CC
GO:0005623 obsolete cell CC
GO:0005886 plasma membrane CC
GO:0009505 plant-type cell wall CC
GO:0016020 membrane CC
GO:0030312 external encapsulating structure CC
GO:0031224 obsolete intrinsic component of membrane CC
GO:0031225 obsolete anchored component of membrane CC
GO:0031226 obsolete intrinsic component of plasma membrane CC
GO:0044425 obsolete membrane part CC
GO:0044459 obsolete plasma membrane part CC
GO:0044464 obsolete cell part CC
GO:0046658 obsolete anchored component of plasma membrane CC
GO:0071944 cell periphery CC
KEGG Term Name Description
map01100 Metabolic pathways -
map00040 Pentose and glucuronate interconversions -