Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
CKAN_01371500.v3
View in Genome Browser
Position
CKAN.scaff0005:18529772-18549204 (+)
19432bp
Gene Type
gene
Gene Description (Protein Product)
116 kDa U5 small nuclear ribonucleoprotein
Organism
Cinnamomum kanehirae
Also AS AT1G06220

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
CKAN_02282700.v3 U6 snRNA-associated Sm-like protein
CKAN_02287100.v3 U6 snRNA-associated Sm-like protein
CKAN_02295900.v3 Component of LSM protein complexes; which are involved in RNA processing
Regulatory gene
CKAN_00109600.v3 MADS-box protein
CKAN_00224200.v3 AP2-like ethylene-responsive transcription factor
CKAN_00281900.v3 transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.