PPGR - Gene Detail

Basic Information

Gene ID	CKAN_01594800.v3 View in Genome Browser
Position	CKAN.scaff0006:26199481-26207563 (-) 8082bp
Gene Type	gene
Gene Description (Protein Product)	Recq-mediated genome instability protein 1; C-terminal OB-fold
Organism	Cinnamomum kanehirae
Also AS	AT5G63540

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

CKAN_02332300.v3 ATP-dependent DNA helicase

CKAN_01744100.v3 Replication factor C subunit 1

CKAN_02521500.v3 Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Unwinds duplex DNA. Component of the meiotic recombination pathway. Seems to play a role in mediating chromosome homology search; chromosome pairing and synapsis at early stages and probably chromosome crossing-over at later stages in meiosis. Probably is involved in the repair of meiotic double strand breaks (DBSs) and in homologous recombination

Regulatory gene

CKAN_01480100.v3 Protein BASIC PENTACYSTEINE6-like

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0000280	nuclear division	BP
GO:0000712	resolution of meiotic recombination intermediates	BP
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006259	DNA metabolic process	BP
GO:0006310	DNA recombination	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006996	organelle organization	BP
GO:0007049	cell cycle	BP
GO:0007059	chromosome segregation	BP
GO:0007127	meiosis I	BP
GO:0007131	reciprocal meiotic recombination	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009987	cellular process	BP
GO:0016043	cellular component organization	BP
GO:0022402	cell cycle process	BP
GO:0022414	reproductive process	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0035825	homologous recombination	BP
GO:0043170	macromolecule metabolic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0045132	meiotic chromosome segregation	BP
GO:0046483	heterocycle metabolic process	BP
GO:0048285	organelle fission	BP
GO:0051304	chromosome separation	BP
GO:0051307	meiotic chromosome separation	BP
GO:0051321	meiotic cell cycle	BP
GO:0061982	meiosis I cell cycle process	BP
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0098813	nuclear chromosome segregation	BP
GO:0140013	meiotic nuclear division	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:1903046	meiotic cell cycle process	BP