Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
CKAN_01603100.v3
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Position
CKAN.scaff0006:27741303-27747233 (+)
5930bp
Gene Type
gene
Gene Description (Protein Product)
mediator of RNA polymerase II transcription subunit
Organism
Cinnamomum kanehirae
Also AS AT3G01435

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
CKAN_01780500.v3 mediator of RNA polymerase II transcription subunit
CKAN_02346200.v3 mediator of RNA polymerase II transcription subunit
CKAN_02377300.v3 Component of the Mediator complex; a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery
Regulatory gene
CKAN_00053400.v3 Protein SENSITIVE TO PROTON RHIZOTOXICITY
CKAN_00082000.v3 ZINC FINGER protein
CKAN_00090300.v3 Zinc finger AN1 and C2H2 domain-containing stress-associated protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway
GO Term Description GO Category
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0016592 mediator complex CC
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032991 protein-containing complex CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044451 obsolete nucleoplasm part CC
GO:0044464 obsolete cell part CC
GO:0070013 intracellular organelle lumen CC