Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
CKAN_01695900.v3
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Position
CKAN.scaff0006:48554837-48565674 (+)
10837bp
Gene Type
gene
Gene Description (Protein Product)
Pectate lyase
Organism
Cinnamomum kanehirae
Also AS AT1G14420

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
CKAN_02518100.v3 Acts in the modification of cell walls via demethylesterification of cell wall pectin
CKAN_02430900.v3 Pectinesterase
CKAN_02519400.v3 Pectinesterase
Regulatory gene
CKAN_00109600.v3 MADS-box protein
CKAN_00283400.v3 MADS-box protein
CKAN_00958800.v3 MADS-box protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0008150 biological_process BP
GO:0009664 plant-type cell wall organization BP
GO:0009987 cellular process BP
GO:0016043 cellular component organization BP
GO:0016829 lyase activity MF
GO:0016835 carbon-oxygen lyase activity MF
GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides MF
GO:0030570 pectate lyase activity MF
GO:0045229 external encapsulating structure organization BP
GO:0071554 cell wall organization or biogenesis BP
GO:0071555 cell wall organization BP
GO:0071669 plant-type cell wall organization or biogenesis BP
GO:0071840 cellular component organization or biogenesis BP
KEGG Term Name Description
map01100 Metabolic pathways -
map00040 Pentose and glucuronate interconversions -