Basic Information
Gene ID
CKAN_01835300.v3
Position
CKAN.scaff0007:39750590-39750896 (+)
306bp
Gene Type
gene
Gene Description (Protein Product)
Transcription factor TFIIH complex subunit Tfb5
Organism
Also AS AT1G12400

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
CKAN_02076900.v3 RNA polymerase II transcription factor B subunit
CKAN_02438600.v3 Transcription initiation factor
CKAN_02287500.v3 Transcription initiation factor TFIID subunit
Regulatory gene
CKAN_00053400.v3 Protein SENSITIVE TO PROTON RHIZOTOXICITY
CKAN_00082000.v3 ZINC FINGER protein
CKAN_00090300.v3 Zinc finger AN1 and C2H2 domain-containing stress-associated protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03420 Nucleotide excision repair Nucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the NER pathway are linked to at least three diseases: xeroderma pigmentosum (XP), Cockayne syndrome (CS), and trichothiodystrophy (TTD). The repair of damaged DNA involves at least 30 polypeptides within two different sub-pathways of NER known as transcription-coupled repair (TCR-NER) and global genome repair (GGR-NER). TCR refers to the expedited repair of lesions located in the actively transcribed strand of genes by RNA polymerase II (RNAP II). In GGR-NER the first step of damage recognition involves XPC-hHR23B complex together with XPE complex (in prokaryotes, uvrAB complex). The following steps of GGR-NER and TCR-NER are similar.
map03022 Basal transcription factors -