Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
CKAN_01927800.v3
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Position
CKAN.scaff0008:5650513-5663309 (+)
12796bp
Gene Type
gene
Gene Description (Protein Product)
Lysyl-tRNA synthetase
Organism
Cinnamomum kanehirae
Also AS AT3G11710

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
CKAN_02017100.v3 Ubiquitin exists either covalently attached to another protein; or free (unanchored). When covalently bound; it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin); a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains; when attached to a target protein; have different functions depending on the Lys residue of the ubiquitin that is linked
CKAN_02274000.v3 Ubiquitin-like domain
CKAN_02268700.v3 Ubiquitin exists either covalently attached to another protein; or free (unanchored). When covalently bound; it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin); a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains; when attached to a target protein; have different functions depending on the Lys residue of the ubiquitin that is linked
Regulatory gene
CKAN_00094000.v3 transcription factor
CKAN_00136200.v3 NAC transcription factor
CKAN_00210900.v3 transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004812 aminoacyl-tRNA ligase activity MF
GO:0004824 lysine-tRNA ligase activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005829 cytosol CC
GO:0005911 cell-cell junction CC
GO:0009506 plasmodesma CC
GO:0016874 ligase activity MF
GO:0016875 ligase activity, forming carbon-oxygen bonds MF
GO:0030054 cell junction CC
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0055044 symplast CC
GO:0140098 catalytic activity, acting on RNA MF
GO:0140101 catalytic activity, acting on a tRNA MF
KEGG Term Name Description
map00970 Aminoacyl-tRNA biosynthesis -