Basic Information
Gene ID
CKAN_01931000.v3
Position
CKAN.scaff0008:6142610-6143459 (+)
849bp
Gene Type
gene
Gene Description (Protein Product)
Helicase associated domain (HA2) Add an annotation
Organism
Also AS AT4G01020

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
CKAN_02516900.v3 ATP-dependent RNA helicase
CKAN_02384500.v3 Pre-mRNA-splicing factor ATP-dependent RNA helicase
CKAN_02085900.v3 Cell division cycle
Regulatory gene
CKAN_01480100.v3 Protein BASIC PENTACYSTEINE6-like

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.