PPGR - Gene Detail

Basic Information

Gene ID	CKAN_02422000.v3 View in Genome Browser
Position	CKAN.scaff0011:12222407-12226662 (-) 4255bp
Gene Type	gene
Gene Description (Protein Product)	2OG-Fe(II) oxygenase superfamily
Organism	Cinnamomum kanehirae
Also AS	AT2G22260

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

CKAN_02593200.v3 Functions as actin-binding component of the Arp2 3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks

CKAN_02593500.v3 Functions as actin-binding component of the Arp2 3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks

CKAN_02657900.v3 DNA polymerase epsilon catalytic subunit

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005488	binding	MF
GO:0005506	iron ion binding	MF
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006259	DNA metabolic process	BP
GO:0006281	DNA repair	BP
GO:0006304	DNA modification	BP
GO:0006307	DNA dealkylation involved in DNA repair	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006950	response to stress	BP
GO:0006974	cellular response to DNA damage stimulus	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008198	ferrous iron binding	MF
GO:0008283	cell population proliferation	BP
GO:0009451	RNA modification	BP
GO:0009987	cellular process	BP
GO:0016070	RNA metabolic process	BP
GO:0016491	oxidoreductase activity	MF
GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	MF
GO:0016706	2-oxoglutarate-dependent dioxygenase activity	MF
GO:0032451	demethylase activity	MF
GO:0033554	cellular response to stress	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0035510	DNA dealkylation	BP
GO:0035511	obsolete oxidative DNA demethylation	BP
GO:0035513	oxidative RNA demethylation	BP
GO:0035515	oxidative RNA demethylase activity	MF
GO:0035552	oxidative single-stranded DNA demethylation	BP
GO:0043167	ion binding	MF
GO:0043169	cation binding	MF
GO:0043170	macromolecule metabolic process	BP
GO:0043412	macromolecule modification	BP
GO:0043734	DNA-N1-methyladenine dioxygenase activity	MF
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044728	obsolete DNA methylation or demethylation	BP
GO:0046483	heterocycle metabolic process	BP
GO:0046872	metal ion binding	MF
GO:0046914	transition metal ion binding	MF
GO:0050896	response to stimulus	BP
GO:0051213	dioxygenase activity	MF
GO:0051716	cellular response to stimulus	BP
GO:0055114	obsolete oxidation-reduction process	BP
GO:0070988	demethylation	BP
GO:0070989	oxidative demethylation	BP
GO:0071704	organic substance metabolic process	BP
GO:0080111	DNA demethylation	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0140098	catalytic activity, acting on RNA	MF
GO:1901360	organic cyclic compound metabolic process	BP
GO:1990930	mRNA N1-methyladenosine dioxygenase activity	MF