Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
CKAN_02433100.v3
View in Genome Browser
Position
CKAN.scaff0011:19205395-19242839 (-)
37444bp
Gene Type
gene
Gene Description (Protein Product)
Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family
Organism
Cinnamomum kanehirae
Also AS AT4G26600

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
CKAN_02451000.v3 Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs
CKAN_02530500.v3 Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit
CKAN_02555400.v3 Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway
GO Term Description GO Category
GO:0000027 ribosomal large subunit assembly BP
GO:0000154 rRNA modification BP
GO:0000470 maturation of LSU-rRNA BP
GO:0001510 RNA methylation BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005730 nucleolus CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006364 rRNA processing BP
GO:0006396 RNA processing BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006996 organelle organization BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008168 methyltransferase activity MF
GO:0008169 C-methyltransferase activity MF
GO:0008173 RNA methyltransferase activity MF
GO:0008284 positive regulation of cell population proliferation BP
GO:0008649 rRNA methyltransferase activity MF
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity MF
GO:0009383 rRNA (cytosine-C5-)-methyltransferase activity MF
GO:0009451 RNA modification BP
GO:0009966 regulation of signal transduction BP
GO:0009987 cellular process BP
GO:0010467 gene expression BP
GO:0010646 regulation of cell communication BP
GO:0016043 cellular component organization BP
GO:0016070 RNA metabolic process BP
GO:0016072 rRNA metabolic process BP
GO:0016434 rRNA (cytosine) methyltransferase activity MF
GO:0016740 transferase activity MF
GO:0016741 transferase activity, transferring one-carbon groups MF
GO:0022607 cellular component assembly BP
GO:0022613 ribonucleoprotein complex biogenesis BP
GO:0022618 ribonucleoprotein complex assembly BP
GO:0023051 regulation of signaling BP
GO:0031167 rRNA methylation BP
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032259 methylation BP
GO:0034470 ncRNA processing BP
GO:0034622 protein-containing complex assembly BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034660 ncRNA metabolic process BP
GO:0042127 regulation of cell population proliferation BP
GO:0042254 ribosome biogenesis BP
GO:0042255 ribosome assembly BP
GO:0042273 ribosomal large subunit biogenesis BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043412 macromolecule modification BP
GO:0043414 macromolecule methylation BP
GO:0043933 protein-containing complex organization BP
GO:0044085 cellular component biogenesis BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0046483 heterocycle metabolic process BP
GO:0048518 positive regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048583 regulation of response to stimulus BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0065003 protein-containing complex assembly BP
GO:0065007 biological regulation BP
GO:0070013 intracellular organelle lumen CC
GO:0070475 rRNA base methylation BP
GO:0070925 organelle assembly BP
GO:0071704 organic substance metabolic process BP
GO:0071826 ribonucleoprotein complex subunit organization BP
GO:0071840 cellular component organization or biogenesis BP
GO:0090304 nucleic acid metabolic process BP
GO:0140098 catalytic activity, acting on RNA MF
GO:0140102 catalytic activity, acting on a rRNA MF
GO:1901360 organic cyclic compound metabolic process BP
GO:1901796 regulation of signal transduction by p53 class mediator BP
GO:1902531 regulation of intracellular signal transduction BP