PPGR - Gene Detail

Basic Information

Gene ID	CKAN_02490500.v3 View in Genome Browser
Position	CKAN.scaff0011:31828902-31854113 (-) 25211bp
Gene Type	gene
Gene Description (Protein Product)	DUF1771
Organism	Cinnamomum kanehirae
Also AS	AT3G15390

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

CKAN_02521900.v3 Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)

CKAN_02516300.v3 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

CKAN_02784200.v3 Regulator of nonsense transcripts 1 homolog

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006396	RNA processing	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009892	negative regulation of metabolic process	BP
GO:0009987	cellular process	BP
GO:0010033	response to organic substance	BP
GO:0010267	ta-siRNA processing	BP
GO:0010467	gene expression	BP
GO:0010468	regulation of gene expression	BP
GO:0010605	negative regulation of macromolecule metabolic process	BP
GO:0010608	post-transcriptional regulation of gene expression	BP
GO:0010629	negative regulation of gene expression	BP
GO:0014070	response to organic cyclic compound	BP
GO:0016070	RNA metabolic process	BP
GO:0016246	RNA-mediated post-transcriptional gene silencing	BP
GO:0016441	post-transcriptional gene silencing	BP
GO:0016458	obsolete gene silencing	BP
GO:0019222	regulation of metabolic process	BP
GO:0030422	siRNA processing	BP
GO:0031047	RNA-mediated gene silencing	BP
GO:0031050	ncRNA processing	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0035194	RNA-mediated post-transcriptional gene silencing	BP
GO:0040029	epigenetic regulation of gene expression	BP
GO:0042221	response to chemical	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043331	response to dsRNA	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0046483	heterocycle metabolic process	BP
GO:0048519	negative regulation of biological process	BP
GO:0050789	regulation of biological process	BP
GO:0050896	response to stimulus	BP
GO:0051716	cellular response to stimulus	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0065007	biological regulation	BP
GO:0070887	cellular response to chemical stimulus	BP
GO:0070918	regulatory ncRNA processing	BP
GO:0071310	cellular response to organic substance	BP
GO:0071359	cellular response to dsRNA	BP
GO:0071407	cellular response to organic cyclic compound	BP
GO:0071704	organic substance metabolic process	BP
GO:0090304	nucleic acid metabolic process	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901698	response to nitrogen compound	BP
GO:1901699	cellular response to nitrogen compound	BP