Basic Information
Gene ID
gene-CKAN_01407700
Position
QPKB01000005.1:38762117-38795347 (+)
33230bp
Gene Type
gene
Gene Description (Protein Product)
MRNA-decapping enzyme-like protein
Organism
Also AS AT1G08370

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-CKAN_02437300 Enhancer of mRNA-decapping protein
gene-CKAN_02106100 Belongs to the DEAD box helicase family
gene-CKAN_01412900 LSM domain
Regulatory gene
gene-CKAN_00136200 NAC transcription factor
gene-CKAN_00139800 transcription factor
gene-CKAN_00180600 transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03018 RNA degradation The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.