Basic Information
Gene ID
gene-CKAN_02436800
Position
QPKB01000011.1:21017596-21032612 (-)
15016bp
Gene Type
gene
Gene Description (Protein Product)
U4 U6.U5 tri-snRNP-associated protein
Organism
Also AS AT5G16780

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-CKAN_02437600 Small nuclear ribonucleoprotein
gene-CKAN_02585400 splicing factor 3A subunit
gene-CKAN_02538600 U4 U6.U5 tri-snRNP-associated protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.