PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Pathway

Basic Information

Gene ID	gene-CKAN_02766000 View in Genome Browser
Position	QPKB01000643.1:21348-22154 (+) 806bp
Gene Type	gene
Gene Description (Protein Product)	Cytochrome b6-f complex subunit 4
Organism	Cinnamomum micranthum
Also AS	ATCG00730

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-CKAN_02785700 complex, subunit

gene-CKAN_02785100 complex, subunit

gene-CKAN_02789600 cytochrome b6

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0001666	response to hypoxia	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005739	mitochondrion	CC
GO:0005740	mitochondrial envelope	CC
GO:0005743	mitochondrial inner membrane	CC
GO:0005746	mitochondrial respirasome	CC
GO:0005750	mitochondrial respiratory chain complex III	CC
GO:0006091	generation of precursor metabolites and energy	BP
GO:0006119	oxidative phosphorylation	BP
GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c	BP
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006163	purine nucleotide metabolic process	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006753	nucleoside phosphate metabolic process	BP
GO:0006793	phosphorus metabolic process	BP
GO:0006796	phosphate-containing compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006810	transport	BP
GO:0006811	monoatomic ion transport	BP
GO:0006812	monoatomic cation transport	BP
GO:0006950	response to stress	BP
GO:0006970	response to osmotic stress	BP
GO:0006972	hyperosmotic response	BP
GO:0006979	response to oxidative stress	BP
GO:0007275	multicellular organism development	BP
GO:0007276	gamete generation	BP
GO:0007283	spermatogenesis	BP
GO:0007584	response to nutrient	BP
GO:0008121	ubiquinol-cytochrome-c reductase activity	MF
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009055	electron transfer activity	MF
GO:0009117	nucleotide metabolic process	BP
GO:0009123	nucleoside monophosphate metabolic process	BP
GO:0009126	purine nucleoside monophosphate metabolic process	BP
GO:0009141	nucleoside triphosphate metabolic process	BP
GO:0009144	purine nucleoside triphosphate metabolic process	BP
GO:0009150	purine ribonucleotide metabolic process	BP
GO:0009161	ribonucleoside monophosphate metabolic process	BP
GO:0009167	purine ribonucleoside monophosphate metabolic process	BP
GO:0009199	ribonucleoside triphosphate metabolic process	BP
GO:0009205	purine ribonucleoside triphosphate metabolic process	BP
GO:0009259	ribonucleotide metabolic process	BP
GO:0009266	response to temperature stimulus	BP
GO:0009408	response to heat	BP
GO:0009605	response to external stimulus	BP
GO:0009628	response to abiotic stimulus	BP
GO:0009636	response to toxic substance	BP
GO:0009651	response to salt stress	BP
GO:0009719	response to endogenous stimulus	BP
GO:0009725	response to hormone	BP
GO:0009987	cellular process	BP
GO:0009991	response to extracellular stimulus	BP
GO:0010033	response to organic substance	BP
GO:0010035	response to inorganic substance	BP
GO:0010038	response to metal ion	BP
GO:0010243	response to organonitrogen compound	BP
GO:0014070	response to organic cyclic compound	BP
GO:0015672	inorganic cation transmembrane transport	BP
GO:0015980	energy derivation by oxidation of organic compounds	BP
GO:0015988	energy coupled proton transmembrane transport, against electrochemical gradient	BP
GO:0015990	electron transport coupled proton transport	BP
GO:0016020	membrane	CC
GO:0016021	membrane	CC
GO:0016310	phosphorylation	BP
GO:0016491	oxidoreductase activity	MF
GO:0016679	oxidoreductase activity, acting on diphenols and related substances as donors	MF
GO:0016681	obsolete oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor	MF
GO:0017144	xenobiotic metabolic process	BP
GO:0019637	organophosphate metabolic process	BP
GO:0019693	ribose phosphate metabolic process	BP
GO:0019866	organelle inner membrane	CC
GO:0019953	sexual reproduction	BP
GO:0020037	heme binding	MF
GO:0022414	reproductive process	BP
GO:0022900	electron transport chain	BP
GO:0022904	respiratory electron transport chain	BP
GO:0031090	organelle membrane	CC
GO:0031099	regeneration	BP
GO:0031100	animal organ regeneration	BP
GO:0031224	obsolete intrinsic component of membrane	CC
GO:0031300	obsolete intrinsic component of organelle membrane	CC
GO:0031301	obsolete integral component of organelle membrane	CC
GO:0031304	obsolete intrinsic component of mitochondrial inner membrane	CC
GO:0031305	obsolete integral component of mitochondrial inner membrane	CC
GO:0031667	response to nutrient levels	BP
GO:0031966	mitochondrial membrane	CC
GO:0031967	organelle envelope	CC
GO:0031975	envelope	CC
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0032504	multicellular organism reproduction	BP
GO:0032592	obsolete integral component of mitochondrial membrane	CC
GO:0032991	protein-containing complex	CC
GO:0033273	response to vitamin	BP
GO:0033590	response to cobalamin	BP
GO:0033762	response to glucagon	BP
GO:0034220	monoatomic ion transmembrane transport	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0036293	response to decreased oxygen levels	BP
GO:0036296	response to increased oxygen levels	BP
GO:0042221	response to chemical	BP
GO:0042493	response to xenobiotic stimulus	BP
GO:0042538	hyperosmotic salinity response	BP
GO:0042773	ATP synthesis coupled electron transport	BP
GO:0042775	mitochondrial ATP synthesis coupled electron transport	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043434	response to peptide hormone	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044425	obsolete membrane part	CC
GO:0044429	obsolete mitochondrial part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044455	obsolete mitochondrial membrane part	CC
GO:0044464	obsolete cell part	CC
GO:0044703	multi-organism reproductive process	BP
GO:0044877	protein-containing complex binding	MF
GO:0045275	respiratory chain complex III	CC
GO:0045333	cellular respiration	BP
GO:0045471	response to ethanol	BP
GO:0046034	ATP metabolic process	BP
GO:0046483	heterocycle metabolic process	BP
GO:0046677	response to antibiotic	BP
GO:0046686	response to cadmium ion	BP
GO:0046688	response to copper ion	BP
GO:0046689	response to mercury ion	BP
GO:0046906	tetrapyrrole binding	MF
GO:0048037	obsolete cofactor binding	MF
GO:0048038	quinone binding	MF
GO:0048039	ubiquinone binding	MF
GO:0048232	male gamete generation	BP
GO:0048513	animal organ development	BP
GO:0048609	multicellular organismal reproductive process	BP
GO:0048731	system development	BP
GO:0048856	anatomical structure development	BP
GO:0050896	response to stimulus	BP
GO:0051179	localization	BP
GO:0051234	establishment of localization	BP
GO:0051592	response to calcium ion	BP
GO:0051704	obsolete multi-organism process	BP
GO:0055085	transmembrane transport	BP
GO:0055086	nucleobase-containing small molecule metabolic process	BP
GO:0055093	response to hyperoxia	BP
GO:0055114	obsolete oxidation-reduction process	BP
GO:0070069	cytochrome complex	CC
GO:0070469	respirasome	CC
GO:0070482	response to oxygen levels	BP
GO:0071704	organic substance metabolic process	BP
GO:0072521	purine-containing compound metabolic process	BP
GO:0097159	organic cyclic compound binding	MF
GO:0097305	response to alcohol	BP
GO:0098573	obsolete intrinsic component of mitochondrial membrane	CC
GO:0098655	monoatomic cation transmembrane transport	BP
GO:0098660	inorganic ion transmembrane transport	BP
GO:0098662	inorganic cation transmembrane transport	BP
GO:0098796	membrane protein complex	CC
GO:0098798	mitochondrial protein-containing complex	CC
GO:0098800	inner mitochondrial membrane protein complex	CC
GO:0098803	respiratory chain complex	CC
GO:1901135	carbohydrate derivative metabolic process	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901363	heterocyclic compound binding	MF
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901652	response to peptide	BP
GO:1901698	response to nitrogen compound	BP
GO:1901700	response to oxygen-containing compound	BP
GO:1902494	catalytic complex	CC
GO:1902600	proton transmembrane transport	BP
GO:1990204	oxidoreductase complex	CC

KEGG Term	Name	Description
map01100	Metabolic pathways	-
map01100	Metabolic pathways	-
map00195	Photosynthesis	Photosynthesis in green plants and specialized bacteria is the process of utilizing light energy to synthesize organic compounds from carbon dioxide and water. It consists of the light dependent part (light reaction) and the light independent part (dark reaction, carbon fixation). The light reaction takes place in thylakoid, a membrane-bound compartment inside chloroplasts and cyanobacteria. The light energy is used by photosystems I and II to generate proton motive force and reducing power (NADPH or NADH). The proton motive force is used by ATP synthase to generate ATP, essentially in the same way as the mitochondrial respiratory chain. The supplies of ATP and NAD(P)H are then used to fix carbon dioxide.
map00190	Oxidative phosphorylation	-