PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Pathway

Basic Information

Gene ID	Ciclev10000326m.g.v1.0 View in Genome Browser
Position	scaffold_5:1089867-1094215 (+) 4348bp
Gene Type	gene
Gene Description (Protein Product)	actin binding
Organism	Citrus clementina
Also AS	AT3G48090CICLE_v10000326mg

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Ciclev10007551m.g.v1.0 Belongs to the adaptor complexes medium subunit family

Ciclev10026756m.g.v1.0 Binds to actin and affects the structure of the cytoskeleton. At high concentrations; profilin prevents the polymerization of actin; whereas it enhances it at low concentrations

Ciclev10009877m.g.v1.0 Binds to actin and affects the structure of the cytoskeleton. At high concentrations; profilin prevents the polymerization of actin; whereas it enhances it at low concentrations

Regulatory gene

Ciclev10000225m.g.v1.0 B3 domain-containing

Ciclev10000756m.g.v1.0 Transcription factor

Ciclev10000850m.g.v1.0 Protein SENSITIVE TO PROTON RHIZOTOXICITY

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0000226	microtubule cytoskeleton organization	BP
GO:0000278	mitotic cell cycle	BP
GO:0000281	mitotic cytokinesis	BP
GO:0000746	obsolete conjugation	BP
GO:0000747	conjugation with cellular fusion	BP
GO:0000755	cytogamy	BP
GO:0000910	cytokinesis	BP
GO:0000912	assembly of actomyosin apparatus involved in cytokinesis	BP
GO:0000915	actomyosin contractile ring assembly	BP
GO:0003674	molecular_function	MF
GO:0003779	actin binding	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005826	actomyosin contractile ring	CC
GO:0005856	cytoskeleton	CC
GO:0005937	mating projection	CC
GO:0005938	cell cortex	CC
GO:0006996	organelle organization	BP
GO:0007010	cytoskeleton organization	BP
GO:0007015	actin filament organization	BP
GO:0007017	microtubule-based process	BP
GO:0007049	cell cycle	BP
GO:0007163	establishment or maintenance of cell polarity	BP
GO:0008064	regulation of actin polymerization or depolymerization	BP
GO:0008092	cytoskeletal protein binding	MF
GO:0008104	protein localization	BP
GO:0008150	biological_process	BP
GO:0008360	regulation of cell shape	BP
GO:0009987	cellular process	BP
GO:0010638	positive regulation of organelle organization	BP
GO:0015629	actin cytoskeleton	CC
GO:0016043	cellular component organization	BP
GO:0019953	sexual reproduction	BP
GO:0022402	cell cycle process	BP
GO:0022413	reproductive process in single-celled organism	BP
GO:0022414	reproductive process	BP
GO:0022603	regulation of anatomical structure morphogenesis	BP
GO:0022604	regulation of cell morphogenesis	BP
GO:0022607	cellular component assembly	BP
GO:0030029	actin filament-based process	BP
GO:0030036	actin cytoskeleton organization	BP
GO:0030427	site of polarized growth	CC
GO:0030832	regulation of actin filament length	BP
GO:0030833	regulation of actin filament polymerization	BP
GO:0030838	positive regulation of actin filament polymerization	BP
GO:0030863	cortical cytoskeleton	CC
GO:0030864	cortical actin cytoskeleton	CC
GO:0030865	cortical cytoskeleton organization	BP
GO:0030866	cortical actin cytoskeleton organization	BP
GO:0031032	actomyosin structure organization	BP
GO:0031334	positive regulation of protein-containing complex assembly	BP
GO:0032153	cell division site	CC
GO:0032155	obsolete cell division site part	CC
GO:0032271	regulation of protein polymerization	BP
GO:0032273	positive regulation of protein polymerization	BP
GO:0032505	reproduction of a single-celled organism	BP
GO:0032506	cytokinetic process	BP
GO:0032535	regulation of cellular component size	BP
GO:0032956	regulation of actin cytoskeleton organization	BP
GO:0032970	regulation of actin filament-based process	BP
GO:0033036	macromolecule localization	BP
GO:0033043	regulation of organelle organization	BP
GO:0033365	protein localization to organelle	BP
GO:0034613	protein localization	BP
GO:0042995	cell projection	CC
GO:0043226	organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043254	regulation of protein-containing complex assembly	BP
GO:0043332	mating projection tip	CC
GO:0044085	cellular component biogenesis	BP
GO:0044087	regulation of cellular component biogenesis	BP
GO:0044089	positive regulation of cellular component biogenesis	BP
GO:0044380	protein localization to cytoskeleton	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044430	obsolete cytoskeletal part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044448	obsolete cell cortex part	CC
GO:0044463	obsolete cell projection part	CC
GO:0044464	obsolete cell part	CC
GO:0044703	multi-organism reproductive process	BP
GO:0044764	obsolete multi-organism cellular process	BP
GO:0044837	actomyosin contractile ring organization	BP
GO:0045010	actin nucleation	BP
GO:0048518	positive regulation of biological process	BP
GO:0048522	positive regulation of cellular process	BP
GO:0050789	regulation of biological process	BP
GO:0050793	regulation of developmental process	BP
GO:0050794	regulation of cellular process	BP
GO:0051017	actin filament bundle assembly	BP
GO:0051128	regulation of cellular component organization	BP
GO:0051130	positive regulation of cellular component organization	BP
GO:0051179	localization	BP
GO:0051285	cell cortex of cell tip	CC
GO:0051286	cell tip	CC
GO:0051301	cell division	BP
GO:0051493	regulation of cytoskeleton organization	BP
GO:0051495	positive regulation of cytoskeleton organization	BP
GO:0051641	cellular localization	BP
GO:0051704	obsolete multi-organism process	BP
GO:0061572	actin filament bundle organization	BP
GO:0061640	cytoskeleton-dependent cytokinesis	BP
GO:0065007	biological regulation	BP
GO:0065008	regulation of biological quality	BP
GO:0070727	cellular macromolecule localization	BP
GO:0070938	contractile ring	CC
GO:0071840	cellular component organization or biogenesis	BP
GO:0071944	cell periphery	CC
GO:0071963	establishment or maintenance of cell polarity regulating cell shape	BP
GO:0072697	protein localization to cell cortex	BP
GO:0072741	protein localization to cell division site	BP
GO:0090066	regulation of anatomical structure size	BP
GO:0097435	supramolecular fiber organization	BP
GO:0099568	cytoplasmic region	CC
GO:0099738	cell cortex region	CC
GO:0110053	regulation of actin filament organization	BP
GO:0120025	plasma membrane bounded cell projection	CC
GO:0120038	obsolete plasma membrane bounded cell projection part	CC
GO:1902407	assembly of actomyosin apparatus involved in mitotic cytokinesis	BP
GO:1902410	mitotic cytokinetic process	BP
GO:1902903	regulation of supramolecular fiber organization	BP
GO:1902905	positive regulation of supramolecular fiber organization	BP
GO:1903047	mitotic cell cycle process	BP
GO:1903119	protein localization to actin cytoskeleton	BP
GO:1903475	mitotic actomyosin contractile ring assembly	BP
GO:1904498	protein localization to mitotic actomyosin contractile ring	BP
GO:1904600	actin fusion focus assembly	BP
GO:1990179	protein localization to actomyosin contractile ring	BP
GO:1990778	protein localization to cell periphery	BP
GO:1990819	actin fusion focus	CC

KEGG Term	Name	Description
map04626	Plant-pathogen interaction	Plants lack animal-like adaptive immunity mechanisms, and therefore have evolved a specific system with multiple layers against invading pathogens. The primary response includes the perception of pathogens by cell-surface pattern-recognition receptors (PRRs) and is referred to as PAMP-triggered immunity (PTI). Activation of FLS2 and EFR triggers MAPK signaling pathway that activates defense genes for antimictobial compounds. The increase in the cytosolic Ca2+ concentration is also a regulator for production of reactive oxygen species and localized programmed cell death/hypersensitive response. The secondary response is called effector-triggered immunity (ETI). Pathogens can acquire the ability to suppress PTI by directly injecting effector proteins into the plant cell through secretion systems. In addition, pathogens can manipulate plant hormone signaling pathways to evade host immune responses using coronatine toxin. Some plants possess specific intracellular surveillance proteins (R proteins) to monitor the presence of pathogen virulence proteins. This ETI occurs with localized programmed cell death to arrest pathogen growth, resulting in cultivar-specific disease resistance.