Basic Information
Gene ID
Ciclev10018788m.g.v1.0
Position
scaffold_3:41254856-41267108 (+)
12252bp
Gene Type
gene
Gene Description (Protein Product)
transcription
Organism
Also AS AT5G18230CICLE_v10018788mg

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Ciclev10027964m.g.v1.0 NOT transcription complex subunit VIP2
Ciclev10027731m.g.v1.0 RNA binding (RRM RBD RNP motifs) family protein
Ciclev10028965m.g.v1.0 CCR4-associated factor 1 homolog
Regulatory gene
Ciclev10000225m.g.v1.0 B3 domain-containing
Ciclev10000612m.g.v1.0 (NAC) domain-containing protein
Ciclev10000881m.g.v1.0 B3 domain-containing protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03018 RNA degradation The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.