PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Pathway

Basic Information

Gene ID	Ciclev10023953m.g.v1.0 View in Genome Browser
Position	scaffold_3:25546089-25546373 (+) 284bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the universal ribosomal protein uL11 family
Organism	Citrus clementina
Also AS	AT4G35490CICLE_v10026688mg

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	Ciclev10029584m.g.v1.0 Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit Ciclev10032912m.g.v1.0 60s ribosomal protein Ciclev10026391m.g.v1.0 ribosomal protein L23
Regulatory gene	Ciclev10000225m.g.v1.0 B3 domain-containing Ciclev10000756m.g.v1.0 Transcription factor Ciclev10000881m.g.v1.0 B3 domain-containing protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0000027	ribosomal large subunit assembly	BP
GO:0000313	organellar ribosome	CC
GO:0000315	organellar large ribosomal subunit	CC
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003723	RNA binding	MF
GO:0003735	structural constituent of ribosome	MF
GO:0005198	structural molecule activity	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005739	mitochondrion	CC
GO:0005759	mitochondrial matrix	CC
GO:0005761	mitochondrial ribosome	CC
GO:0005762	mitochondrial large ribosomal subunit	CC
GO:0005840	ribosome	CC
GO:0006412	translation	BP
GO:0006518	peptide metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006996	organelle organization	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009059	macromolecule biosynthetic process	BP
GO:0009987	cellular process	BP
GO:0010467	gene expression	BP
GO:0015934	large ribosomal subunit	CC
GO:0016043	cellular component organization	BP
GO:0019538	protein metabolic process	BP
GO:0019843	rRNA binding	MF
GO:0022607	cellular component assembly	BP
GO:0022613	ribonucleoprotein complex biogenesis	BP
GO:0022618	ribonucleoprotein complex assembly	BP
GO:0031974	membrane-enclosed lumen	CC
GO:0032543	mitochondrial translation	BP
GO:0032991	protein-containing complex	CC
GO:0034622	protein-containing complex assembly	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034645	cellular macromolecule biosynthetic process	BP
GO:0042254	ribosome biogenesis	BP
GO:0042255	ribosome assembly	BP
GO:0042273	ribosomal large subunit biogenesis	BP
GO:0043043	peptide biosynthetic process	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0043603	amide metabolic process	BP
GO:0043604	amide biosynthetic process	BP
GO:0043933	protein-containing complex organization	BP
GO:0044085	cellular component biogenesis	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044391	ribosomal subunit	CC
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044429	obsolete mitochondrial part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0065003	protein-containing complex assembly	BP
GO:0070013	intracellular organelle lumen	CC
GO:0070925	organelle assembly	BP
GO:0071704	organic substance metabolic process	BP
GO:0071826	ribonucleoprotein complex subunit organization	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0097159	organic cyclic compound binding	MF
GO:0098798	mitochondrial protein-containing complex	CC
GO:0140053	mitochondrial gene expression	BP
GO:1901363	heterocyclic compound binding	MF
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1990904	ribonucleoprotein complex	CC

KEGG Term	Name	Description
map03010	Ribosome	-