Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
Ciclev10024349m.g.v1.0
View in Genome Browser
Position
scaffold_3:4999801-5000310 (+)
509bp
Gene Type
gene
Gene Description (Protein Product)
chromatin DNA binding
Organism
Citrus clementina
Also AS AT4G16845CICLE_v10024349mg

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Ciclev10030491m.g.v1.0 lysine-specific demethylase
Ciclev10024695m.g.v1.0 Histone-lysine n-methyltransferase
Ciclev10024826m.g.v1.0 Histone-lysine n-methyltransferase
Regulatory gene
Ciclev10001376m.g.v1.0 tesmin TSO1-like CXC
Ciclev10001533m.g.v1.0 GATA transcription factor
Ciclev10002056m.g.v1.0 GATA transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway
GO Term Description GO Category
GO:0000122 negative regulation of transcription by RNA polymerase II BP
GO:0000228 nuclear chromosome CC
GO:0000785 chromatin CC
GO:0000790 chromatin CC
GO:0000792 heterochromatin CC
GO:0000803 sex chromosome CC
GO:0000976 transcription cis-regulatory region binding MF
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding MF
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding MF
GO:0000987 cis-regulatory region sequence-specific DNA binding MF
GO:0001012 RNA polymerase II transcription regulatory region sequence-specific DNA binding MF
GO:0001067 transcription regulatory region nucleic acid binding MF
GO:0001739 sex chromatin CC
GO:0001817 regulation of cytokine production BP
GO:0001818 negative regulation of cytokine production BP
GO:0001932 regulation of protein phosphorylation BP
GO:0001933 negative regulation of protein phosphorylation BP
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003677 DNA binding MF
GO:0003682 chromatin binding MF
GO:0003690 double-stranded DNA binding MF
GO:0003723 RNA binding MF
GO:0003824 catalytic activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0005694 chromosome CC
GO:0005720 heterochromatin CC
GO:0005730 nucleolus CC
GO:0006325 chromatin organization BP
GO:0006355 regulation of DNA-templated transcription BP
GO:0006357 regulation of transcription by RNA polymerase II BP
GO:0006464 protein modification process BP
GO:0006479 protein methylation BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006996 organelle organization BP
GO:0007275 multicellular organism development BP
GO:0007399 nervous system development BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008168 methyltransferase activity MF
GO:0008213 protein alkylation BP
GO:0008276 protein methyltransferase activity MF
GO:0008284 positive regulation of cell population proliferation BP
GO:0008285 negative regulation of cell population proliferation BP
GO:0009889 regulation of biosynthetic process BP
GO:0009890 negative regulation of biosynthetic process BP
GO:0009892 negative regulation of metabolic process BP
GO:0009966 regulation of signal transduction BP
GO:0009968 negative regulation of signal transduction BP
GO:0009987 cellular process BP
GO:0010468 regulation of gene expression BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010558 negative regulation of macromolecule biosynthetic process BP
GO:0010563 negative regulation of phosphorus metabolic process BP
GO:0010564 regulation of cell cycle process BP
GO:0010605 negative regulation of macromolecule metabolic process BP
GO:0010629 negative regulation of gene expression BP
GO:0010646 regulation of cell communication BP
GO:0010648 negative regulation of cell communication BP
GO:0010948 negative regulation of cell cycle process BP
GO:0016043 cellular component organization BP
GO:0016458 obsolete gene silencing BP
GO:0016567 protein ubiquitination BP
GO:0016569 obsolete covalent chromatin modification BP
GO:0016570 histone modification BP
GO:0016571 histone methylation BP
GO:0016574 histone ubiquitination BP
GO:0016586 RSC-type complex CC
GO:0016604 nuclear body CC
GO:0016740 transferase activity MF
GO:0016741 transferase activity, transferring one-carbon groups MF
GO:0018022 peptidyl-lysine methylation BP
GO:0018193 peptidyl-amino acid modification BP
GO:0018205 peptidyl-lysine modification BP
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019220 regulation of phosphate metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019538 protein metabolic process BP
GO:0022008 neurogenesis BP
GO:0023051 regulation of signaling BP
GO:0023057 negative regulation of signaling BP
GO:0030154 cell differentiation BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031324 negative regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0031327 negative regulation of cellular biosynthetic process BP
GO:0031399 regulation of protein modification process BP
GO:0031400 negative regulation of protein modification process BP
GO:0031490 chromatin DNA binding MF
GO:0031519 PcG protein complex CC
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032259 methylation BP
GO:0032268 regulation of protein metabolic process BP
GO:0032269 negative regulation of protein metabolic process BP
GO:0032446 protein modification by small protein conjugation BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032642 regulation of chemokine production BP
GO:0032682 negative regulation of chemokine production BP
GO:0032991 protein-containing complex CC
GO:0032993 protein-DNA complex CC
GO:0034708 methyltransferase complex CC
GO:0034968 histone lysine methylation BP
GO:0035064 methylated histone binding MF
GO:0035097 histone methyltransferase complex CC
GO:0035098 ESC/E(Z) complex CC
GO:0036211 protein modification process BP
GO:0040029 epigenetic regulation of gene expression BP
GO:0042054 histone methyltransferase activity MF
GO:0042127 regulation of cell population proliferation BP
GO:0042325 regulation of phosphorylation BP
GO:0042326 negative regulation of phosphorylation BP
GO:0042393 histone binding MF
GO:0042509 regulation of tyrosine phosphorylation of STAT protein BP
GO:0042532 negative regulation of tyrosine phosphorylation of STAT protein BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043412 macromolecule modification BP
GO:0043414 macromolecule methylation BP
GO:0043565 sequence-specific DNA binding MF
GO:0044212 transcription cis-regulatory region binding MF
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044427 obsolete chromosomal part CC
GO:0044428 obsolete nuclear part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044451 obsolete nucleoplasm part CC
GO:0044454 obsolete nuclear chromosome part CC
GO:0044464 obsolete cell part CC
GO:0045595 regulation of cell differentiation BP
GO:0045596 negative regulation of cell differentiation BP
GO:0045786 negative regulation of cell cycle BP
GO:0045814 negative regulation of gene expression, epigenetic BP
GO:0045892 negative regulation of DNA-templated transcription BP
GO:0045934 negative regulation of nucleobase-containing compound metabolic process BP
GO:0045936 negative regulation of phosphate metabolic process BP
GO:0046425 regulation of receptor signaling pathway via JAK-STAT BP
GO:0046426 negative regulation of receptor signaling pathway via JAK-STAT BP
GO:0048518 positive regulation of biological process BP
GO:0048519 negative regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048523 negative regulation of cellular process BP
GO:0048583 regulation of response to stimulus BP
GO:0048585 negative regulation of response to stimulus BP
GO:0048731 system development BP
GO:0048856 anatomical structure development BP
GO:0048869 cellular developmental process BP
GO:0050678 regulation of epithelial cell proliferation BP
GO:0050680 negative regulation of epithelial cell proliferation BP
GO:0050730 regulation of peptidyl-tyrosine phosphorylation BP
GO:0050732 negative regulation of peptidyl-tyrosine phosphorylation BP
GO:0050789 regulation of biological process BP
GO:0050793 regulation of developmental process BP
GO:0050794 regulation of cellular process BP
GO:0051093 negative regulation of developmental process BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051172 negative regulation of nitrogen compound metabolic process BP
GO:0051174 regulation of phosphorus metabolic process BP
GO:0051239 regulation of multicellular organismal process BP
GO:0051241 negative regulation of multicellular organismal process BP
GO:0051246 regulation of protein metabolic process BP
GO:0051248 negative regulation of protein metabolic process BP
GO:0051252 regulation of RNA metabolic process BP
GO:0051253 negative regulation of RNA metabolic process BP
GO:0051276 chromosome organization BP
GO:0051726 regulation of cell cycle BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0065007 biological regulation BP
GO:0070013 intracellular organelle lumen CC
GO:0070316 regulation of G0 to G1 transition BP
GO:0070317 negative regulation of G0 to G1 transition BP
GO:0070603 SWI/SNF superfamily-type complex CC
GO:0070647 protein modification by small protein conjugation or removal BP
GO:0070734 histone H3-K27 methylation BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0080090 regulation of primary metabolic process BP
GO:0097159 organic cyclic compound binding MF
GO:0098532 histone H3-K27 trimethylation BP
GO:0140030 modification-dependent protein binding MF
GO:0140034 methylation-dependent protein binding MF
GO:0140096 catalytic activity, acting on a protein MF
GO:1901363 heterocyclic compound binding MF
GO:1901564 organonitrogen compound metabolic process BP
GO:1902494 catalytic complex CC
GO:1902531 regulation of intracellular signal transduction BP
GO:1902532 negative regulation of intracellular signal transduction BP
GO:1902679 negative regulation of RNA biosynthetic process BP
GO:1903506 regulation of nucleic acid-templated transcription BP
GO:1903507 negative regulation of nucleic acid-templated transcription BP
GO:1904892 regulation of receptor signaling pathway via STAT BP
GO:1904893 negative regulation of receptor signaling pathway via STAT BP
GO:1904949 ATPase complex CC
GO:1990234 transferase complex CC
GO:1990837 sequence-specific double-stranded DNA binding MF
GO:1990841 promoter-specific chromatin binding MF
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2000113 negative regulation of cellular macromolecule biosynthetic process BP
GO:2001141 regulation of RNA biosynthetic process BP
GO:2001228 regulation of response to gamma radiation BP
GO:2001229 negative regulation of response to gamma radiation BP