Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
Ciclev10027142m.g.v1.0
View in Genome Browser
Position
scaffold_7:20047191-20048536 (-)
1345bp
Gene Type
gene
Gene Description (Protein Product)
vesicle-mediated transport
Organism
Citrus clementina
Also AS AT5G01430CICLE_v10027142mg

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Ciclev10027703m.g.v1.0 Carbamoyl-phosphate synthase large chain
Ciclev10030839m.g.v1.0 P5CS plays a key role in proline biosynthesis; leading to osmoregulation in plants
Ciclev10031350m.g.v1.0 Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0000137 Golgi cis cisterna CC
GO:0000139 Golgi membrane CC
GO:0001664 G protein-coupled receptor binding MF
GO:0001890 placenta development BP
GO:0001893 maternal placenta development BP
GO:0001932 regulation of protein phosphorylation BP
GO:0001934 positive regulation of protein phosphorylation BP
GO:0002791 regulation of peptide secretion BP
GO:0002793 positive regulation of peptide secretion BP
GO:0003006 developmental process involved in reproduction BP
GO:0003674 molecular_function MF
GO:0005102 signaling receptor binding MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005576 extracellular region CC
GO:0005615 extracellular space CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005635 nuclear envelope CC
GO:0005737 cytoplasm CC
GO:0005783 endoplasmic reticulum CC
GO:0005794 Golgi apparatus CC
GO:0005795 Golgi stack CC
GO:0005798 Golgi-associated vesicle CC
GO:0005802 trans-Golgi network CC
GO:0005886 plasma membrane CC
GO:0006810 transport BP
GO:0006873 intracellular monoatomic ion homeostasis BP
GO:0006874 intracellular calcium ion homeostasis BP
GO:0006875 obsolete intracellular metal ion homeostasis BP
GO:0006886 intracellular protein transport BP
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport BP
GO:0006892 post-Golgi vesicle-mediated transport BP
GO:0006895 Golgi to endosome transport BP
GO:0007154 cell communication BP
GO:0007165 signal transduction BP
GO:0007186 G protein-coupled receptor signaling pathway BP
GO:0007200 phospholipase C-activating G protein-coupled receptor signaling pathway BP
GO:0007204 positive regulation of cytosolic calcium ion concentration BP
GO:0007275 multicellular organism development BP
GO:0007565 female pregnancy BP
GO:0008104 protein localization BP
GO:0008150 biological_process BP
GO:0008285 negative regulation of cell population proliferation BP
GO:0009888 tissue development BP
GO:0009893 positive regulation of metabolic process BP
GO:0009966 regulation of signal transduction BP
GO:0009967 positive regulation of signal transduction BP
GO:0009987 cellular process BP
GO:0010562 positive regulation of phosphorus metabolic process BP
GO:0010604 positive regulation of macromolecule metabolic process BP
GO:0010646 regulation of cell communication BP
GO:0010647 positive regulation of cell communication BP
GO:0010817 regulation of hormone levels BP
GO:0012505 endomembrane system CC
GO:0015031 protein transport BP
GO:0015833 peptide transport BP
GO:0016020 membrane CC
GO:0016021 membrane CC
GO:0016192 vesicle-mediated transport BP
GO:0016197 endosomal transport BP
GO:0016324 apical plasma membrane CC
GO:0016482 cytosolic transport BP
GO:0019220 regulation of phosphate metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019725 cellular homeostasis BP
GO:0022414 reproductive process BP
GO:0022602 ovulation cycle process BP
GO:0023051 regulation of signaling BP
GO:0023052 signaling BP
GO:0023056 positive regulation of signaling BP
GO:0030003 intracellular monoatomic cation homeostasis BP
GO:0030134 COPII-coated ER to Golgi transport vesicle CC
GO:0030135 coated vesicle CC
GO:0031090 organelle membrane CC
GO:0031224 obsolete intrinsic component of membrane CC
GO:0031323 regulation of cellular metabolic process BP
GO:0031325 positive regulation of cellular metabolic process BP
GO:0031399 regulation of protein modification process BP
GO:0031401 positive regulation of protein modification process BP
GO:0031410 cytoplasmic vesicle CC
GO:0031773 kisspeptin receptor binding MF
GO:0031967 organelle envelope CC
GO:0031975 envelope CC
GO:0031982 vesicle CC
GO:0031984 organelle subcompartment CC
GO:0031985 Golgi cisterna CC
GO:0032268 regulation of protein metabolic process BP
GO:0032270 positive regulation of protein metabolic process BP
GO:0032276 regulation of gonadotropin secretion BP
GO:0032278 positive regulation of gonadotropin secretion BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032504 multicellular organism reproduction BP
GO:0032879 regulation of localization BP
GO:0033036 macromolecule localization BP
GO:0033684 regulation of luteinizing hormone secretion BP
GO:0033686 positive regulation of luteinizing hormone secretion BP
GO:0034613 protein localization BP
GO:0036477 somatodendritic compartment CC
GO:0042127 regulation of cell population proliferation BP
GO:0042147 retrograde transport, endosome to Golgi BP
GO:0042325 regulation of phosphorylation BP
GO:0042327 positive regulation of phosphorylation BP
GO:0042592 homeostatic process BP
GO:0042698 ovulation cycle BP
GO:0042886 amide transport BP
GO:0042995 cell projection CC
GO:0043005 neuron projection CC
GO:0043025 neuronal cell body CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043408 regulation of MAPK cascade BP
GO:0043410 positive regulation of MAPK cascade BP
GO:0044057 regulation of system process BP
GO:0044060 regulation of endocrine process BP
GO:0044297 cell body CC
GO:0044421 obsolete extracellular region part CC
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044428 obsolete nuclear part CC
GO:0044431 obsolete Golgi apparatus part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044459 obsolete plasma membrane part CC
GO:0044464 obsolete cell part CC
GO:0044703 multi-organism reproductive process BP
GO:0044706 multi-multicellular organism process BP
GO:0045177 apical part of cell CC
GO:0045184 establishment of protein localization BP
GO:0045937 positive regulation of phosphate metabolic process BP
GO:0046697 decidualization BP
GO:0046883 regulation of hormone secretion BP
GO:0046887 positive regulation of hormone secretion BP
GO:0046907 intracellular transport BP
GO:0048193 Golgi vesicle transport BP
GO:0048511 rhythmic process BP
GO:0048513 animal organ development BP
GO:0048518 positive regulation of biological process BP
GO:0048519 negative regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048523 negative regulation of cellular process BP
GO:0048583 regulation of response to stimulus BP
GO:0048584 positive regulation of response to stimulus BP
GO:0048608 reproductive structure development BP
GO:0048609 multicellular organismal reproductive process BP
GO:0048731 system development BP
GO:0048856 anatomical structure development BP
GO:0048878 chemical homeostasis BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050801 monoatomic ion homeostasis BP
GO:0050804 modulation of chemical synaptic transmission BP
GO:0050806 positive regulation of synaptic transmission BP
GO:0050896 response to stimulus BP
GO:0051046 regulation of secretion BP
GO:0051047 positive regulation of secretion BP
GO:0051049 regulation of transport BP
GO:0051050 positive regulation of transport BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051173 positive regulation of nitrogen compound metabolic process BP
GO:0051174 regulation of phosphorus metabolic process BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051239 regulation of multicellular organismal process BP
GO:0051240 positive regulation of multicellular organismal process BP
GO:0051246 regulation of protein metabolic process BP
GO:0051247 positive regulation of protein metabolic process BP
GO:0051480 regulation of cytosolic calcium ion concentration BP
GO:0051482 positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G protein-coupled signaling pathway BP
GO:0051641 cellular localization BP
GO:0051649 establishment of localization in cell BP
GO:0051704 obsolete multi-organism process BP
GO:0051716 cellular response to stimulus BP
GO:0055065 obsolete metal ion homeostasis BP
GO:0055074 calcium ion homeostasis BP
GO:0055080 monoatomic cation homeostasis BP
GO:0055082 intracellular chemical homeostasis BP
GO:0060112 generation of ovulation cycle rhythm BP
GO:0060123 regulation of growth hormone secretion BP
GO:0060124 positive regulation of growth hormone secretion BP
GO:0060135 maternal process involved in female pregnancy BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0061458 reproductive system development BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0070727 cellular macromolecule localization BP
GO:0071702 organic substance transport BP
GO:0071705 nitrogen compound transport BP
GO:0071855 neuropeptide receptor binding MF
GO:0071944 cell periphery CC
GO:0072503 obsolete cellular divalent inorganic cation homeostasis BP
GO:0072507 obsolete divalent inorganic cation homeostasis BP
GO:0080090 regulation of primary metabolic process BP
GO:0090087 regulation of peptide transport BP
GO:0090276 regulation of peptide hormone secretion BP
GO:0090277 positive regulation of peptide hormone secretion BP
GO:0097458 obsolete neuron part CC
GO:0097708 intracellular vesicle CC
GO:0098588 bounding membrane of organelle CC
GO:0098590 plasma membrane region CC
GO:0098771 inorganic ion homeostasis BP
GO:0098791 Golgi apparatus subcompartment CC
GO:0099177 regulation of trans-synaptic signaling BP
GO:0120025 plasma membrane bounded cell projection CC
GO:1902531 regulation of intracellular signal transduction BP
GO:1902533 positive regulation of intracellular signal transduction BP
GO:1903530 regulation of secretion by cell BP
GO:1903532 positive regulation of secretion by cell BP
KEGG Term Name Description
map03015 mRNA surveillance pathway The mRNA surveillance pathway is a quality control mechanism that detects and degrades abnormal mRNAs. These pathways include nonsense-mediated mRNA decay (NMD), nonstop mRNA decay (NSD), and no-go decay (NGD). NMD is a mechanism that eliminates mRNAs containing premature translation-termination codons (PTCs). In vertebrates, PTCs trigger efficient NMD when located upstream of an exon junction complex (EJC). Upf3, together with Upf1 and Upf2, may signal the presence of the PTC to the 5'end of the transcript, resulting in decapping and rapid exonucleolytic digestion of the mRNA. In the NSD pathway, which targets mRNAs lacking termination codons, the ribosome is believed to translate through the 3' untranslated region and stall at the end of the poly(A) tail. NSD involves an eRF3-like protein, Ski7p, which is hypothesized to bind the empty A site of the ribosome and recruit the exosome to degrade the mRNA from the 3' end. NGD targets mRNAs with stalls in translation elongation for endonucleolytic cleavage in a process involving the Dom34 and Hbs1 proteins.
map01100 Metabolic pathways -
map00480 Glutathione metabolism -