Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
Ciclev10032445m.g.v1.0
View in Genome Browser
Position
scaffold_4:3525466-3529173 (-)
3707bp
Gene Type
gene
Gene Description (Protein Product)
TONNEAU 1a-like
Organism
Citrus clementina
Also AS AT3G55005CICLE_v10032445mg

Gene Structure

upstream:
Get Sequence

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Ciclev10033394m.g.v1.0 Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex; participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators; where it is required for transcription. The TREX-2 complex functions in docking export-competent ribonucleoprotein particles (mRNPs) to the nuclear entrance of the nuclear pore complex (nuclear basket). TREX-2 participates in mRNA export and accurate chromatin positioning in the nucleus by tethering genes to the nuclear periphery
Regulatory gene
Ciclev10000065m.g.v1.0 Protein ALWAYS EARLY
Ciclev10000225m.g.v1.0 B3 domain-containing
Ciclev10000454m.g.v1.0 Trihelix transcription factor

Load All Networks

Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway
GO Term Description GO Category
GO:0000226 microtubule cytoskeleton organization BP
GO:0000278 mitotic cell cycle BP
GO:0000281 mitotic cytokinesis BP
GO:0000910 cytokinesis BP
GO:0000911 cytokinesis by cell plate formation BP
GO:0000913 preprophase band assembly BP
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005856 cytoskeleton CC
GO:0005886 plasma membrane CC
GO:0005938 cell cortex CC
GO:0006996 organelle organization BP
GO:0007010 cytoskeleton organization BP
GO:0007017 microtubule-based process BP
GO:0007049 cell cycle BP
GO:0008150 biological_process BP
GO:0009574 preprophase band CC
GO:0009987 cellular process BP
GO:0015630 microtubule cytoskeleton CC
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0022402 cell cycle process BP
GO:0022607 cellular component assembly BP
GO:0030863 cortical cytoskeleton CC
GO:0030865 cortical cytoskeleton organization BP
GO:0030981 cortical microtubule cytoskeleton CC
GO:0032506 cytokinetic process BP
GO:0043226 organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0044085 cellular component biogenesis BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044430 obsolete cytoskeletal part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044448 obsolete cell cortex part CC
GO:0044464 obsolete cell part CC
GO:0051301 cell division BP
GO:0061640 cytoskeleton-dependent cytokinesis BP
GO:0071840 cellular component organization or biogenesis BP
GO:0071944 cell periphery CC
GO:0099568 cytoplasmic region CC
GO:1902410 mitotic cytokinetic process BP
GO:1903047 mitotic cell cycle process BP