PPGR - Gene Detail

Basic Information

Gene ID	Ciclev10032509m.g.v1.0 View in Genome Browser
Position	scaffold_4:22451690-22454024 (-) 2334bp
Gene Type	gene
Gene Description (Protein Product)	Involved in the biosynthesis of phylloquinone (vitamin K1). Methyltransferase required for the conversion of 2-phytyl- 1;4-beta-naphthoquinol to phylloquinol
Organism	Citrus clementina
Also AS	AT1G23360CICLE_v10032509mg

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Ciclev10032923m.g.v1.0 Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains; F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel; linked together by a central stalk and a peripheral stalk. During catalysis; ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk; which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a ATP6 static relative to the rotary elements

Ciclev10032681m.g.v1.0 Component of the coenzyme Q biosynthetic pathway. May play a role in organizing a multi-subunit COQ enzyme complex required for coenzyme Q biosynthesis. Required for steady-state levels of other COQ polypeptides

Regulatory gene

Ciclev10000065m.g.v1.0 Protein ALWAYS EARLY

Ciclev10000622m.g.v1.0 SANT SWI3; ADA2; N-CoR and TFIIIB'' DNA-binding domains

Ciclev10001730m.g.v1.0 transcription factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0006732	obsolete coenzyme metabolic process	BP
GO:0006766	vitamin metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008168	methyltransferase activity	MF
GO:0008169	C-methyltransferase activity	MF
GO:0008171	O-methyltransferase activity	MF
GO:0009058	biosynthetic process	BP
GO:0009108	obsolete coenzyme biosynthetic process	BP
GO:0009110	vitamin biosynthetic process	BP
GO:0009507	chloroplast	CC
GO:0009536	plastid	CC
GO:0009987	cellular process	BP
GO:0016740	transferase activity	MF
GO:0016741	transferase activity, transferring one-carbon groups	MF
GO:0032259	methylation	BP
GO:0042180	cellular ketone metabolic process	BP
GO:0042181	ketone biosynthetic process	BP
GO:0042372	phylloquinone biosynthetic process	BP
GO:0042374	phylloquinone metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044237	cellular metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044283	small molecule biosynthetic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0051186	obsolete cofactor metabolic process	BP
GO:0051188	obsolete cofactor biosynthetic process	BP
GO:0052624	2-phytyl-1,4-naphthoquinone methyltransferase activity	MF
GO:0071704	organic substance metabolic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1901661	quinone metabolic process	BP
GO:1901663	quinone biosynthetic process	BP

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map00130	Ubiquinone and other terpenoid-quinone biosynthesis	Ubiquinone (UQ), also called coenzyme Q, and plastoquinone (PQ) are electron carriers in oxidative phosphorylation and photosynthesis, respectively. The quinoid nucleus of ubiquinone is derived from the shikimate pathway; 4-hydroxybenzoate is directly formed from chorismate in bacteria, while it can be formed from either chorismate or tyrosine in yeast. The following biosynthesis of terpenoid moiety involves reactions of prenylation, decarboxylation, and three hydroxylations alternating with three methylations. The order of these reactions are somewhat different between bacteria and yeast. Phylloquinone (vitamin K1), menaquinone (vitamin K2), and tocopherol (vitamin E) are fat-soluble vitamins. Phylloquinone is a compound present in all photosynthetic plants serving as a cofactor for photosystem I-mediated electron transport. Menaquinone is an obligatory component of the electron-transfer pathway in bacteria.