PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	orange1.1g003507m.g.v1.1 View in Genome Browser
Position	scaffold00007:122452-126593 (-) 4141bp
Gene Type	gene
Gene Description (Protein Product)	Zinc finger CCCH domain-containing protein
Organism	Citrus sinensis
Also AS	AT2G33835CICLE_v10014553mg

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	orange1.1g007108m.g.v1.1 Belongs to the Frigida family orange1.1g023255m.g.v1.1 Protein FLC EXPRESSOR orange1.1g012719m.g.v1.1 Belongs to the RuvB family
Regulatory gene	orange1.1g000304m.g.v1.1 SANT SWI3; ADA2; N-CoR and TFIIIB'' DNA-binding domains orange1.1g001409m.g.v1.1 Myb-like protein L orange1.1g002213m.g.v1.1 Tesmin/TSO1-like CXC domain
Target gene	orange1.1g000316m.g.v1.1 Inactive serine threonine-protein kinase orange1.1g000338m.g.v1.1 mediator of RNA polymerase II transcription subunit orange1.1g000814m.g.v1.1 Fanconi anemia group J protein

Load All Networks

Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0008150	biological_process	BP
GO:0010219	regulation of vernalization response	BP
GO:0010220	positive regulation of vernalization response	BP
GO:0048518	positive regulation of biological process	BP
GO:0048583	regulation of response to stimulus	BP
GO:0048584	positive regulation of response to stimulus	BP
GO:0050789	regulation of biological process	BP
GO:0065007	biological regulation	BP
GO:0080134	regulation of response to stress	BP