Basic Information
Gene ID
orange1.1g029982m.g.v1.1
Position
scaffold00021:572571-575118 (-)
2547bp
Gene Type
gene
Gene Description (Protein Product)
High mobility group B protein
Organism
Also AS AT3G51880CICLE_v10032930mg

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
orange1.1g038726m.g.v1.1 helicase protein
orange1.1g047062m.g.v1.1 helicase protein
orange1.1g038620m.g.v1.1 helicase protein
Regulatory gene
orange1.1g002489m.g.v1.1 B3 domain-containing protein
orange1.1g002708m.g.v1.1 B3 domain-containing
orange1.1g005737m.g.v1.1 AP2-like ethylene-responsive transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Term Name Description
map03410 Base excision repair Base excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair initiated by lesion-specific DNA glycosylases and completed by either of the two sub-pathways: short-patch BER where only one nucleotide is replaced and long-patch BER where 2-13 nucleotides are replaced. Each sub-pathway of BER relies on the formation of protein complexes that assemble at the site of the DNA lesion and facilitate repair in a coordinated fashion. This process of complex formation appears to provide an increase in specificity and efficiency to the BER pathway, thereby facilitating the maintenance of genome integrity by preventing the accumulation of highly toxic repair intermediates.