Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
orange1.1g030190m.g.v1.1
View in Genome Browser
Position
scaffold00003:2196932-2199604 (-)
2672bp
Gene Type
gene
Gene Description (Protein Product)
response to light intensity
Organism
Citrus sinensis
Also AS AT1G10522CICLE_v10032870mg

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
orange1.1g043519m.g.v1.1 Chloroplast processing
orange1.1g038395m.g.v1.1 Pentatricopeptide repeat-containing protein
orange1.1g030804m.g.v1.1 50S ribosomal protein L18
Regulatory gene
orange1.1g005737m.g.v1.1 AP2-like ethylene-responsive transcription factor
orange1.1g009943m.g.v1.1 Floral homeotic protein APETALA 2
orange1.1g010039m.g.v1.1 AP2-like ethylene-responsive transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000427 plastid-encoded plastid RNA polymerase complex CC
GO:0000428 DNA-directed RNA polymerase complex CC
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003677 DNA binding MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0008150 biological_process BP
GO:0009295 nucleoid CC
GO:0009314 response to radiation BP
GO:0009416 response to light stimulus BP
GO:0009507 chloroplast CC
GO:0009532 plastid stroma CC
GO:0009536 plastid CC
GO:0009570 chloroplast stroma CC
GO:0009628 response to abiotic stimulus BP
GO:0009642 response to light intensity BP
GO:0010468 regulation of gene expression BP
GO:0019222 regulation of metabolic process BP
GO:0030880 RNA polymerase complex CC
GO:0032991 protein-containing complex CC
GO:0042644 chloroplast nucleoid CC
GO:0042646 plastid nucleoid CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044434 obsolete chloroplast part CC
GO:0044435 obsolete plastid part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0050789 regulation of biological process BP
GO:0050896 response to stimulus BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0061695 transferase complex, transferring phosphorus-containing groups CC
GO:0065007 biological regulation BP
GO:0097159 organic cyclic compound binding MF
GO:1901363 heterocyclic compound binding MF
GO:1902494 catalytic complex CC
GO:1990234 transferase complex CC