Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Basic Information
Gene ID
orange1.1g033797m.g.v1.1
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Position
scaffold00038:765354-767371 (-)
2017bp
Gene Type
gene
Gene Description (Protein Product)
Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex; participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators; where it is required for transcription. The TREX-2 complex functions in docking export-competent ribonucleoprotein particles (mRNPs) to the nuclear entrance of the nuclear pore complex (nuclear basket). TREX-2 participates in mRNA export and accurate chromatin positioning in the nucleus by tethering genes to the nuclear periphery
Organism
Citrus sinensis
Also AS AT3G27100CICLE_v10017250mg

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
orange1.1g036886m.g.v1.1 PCI domain-containing protein
orange1.1g044018m.g.v1.1 Tho complex subunit
orange1.1g034564m.g.v1.1 U6 snRNA-associated Sm-like protein
Regulatory gene
orange1.1g002489m.g.v1.1 B3 domain-containing protein
orange1.1g002708m.g.v1.1 B3 domain-containing
orange1.1g007393m.g.v1.1 (NAC) domain-containing protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)