Basic Information
Gene ID
orange1.1g037283m.g.v1.1
Position
scaffold00026:719262-720245 (-)
983bp
Gene Type
gene
Gene Description (Protein Product)
PHD finger-like domain-containing protein
Organism
Also AS AT1G07170CICLE_v10029623mg

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
orange1.1g039282m.g.v1.1 Crooked neck-like protein 1
orange1.1g047539m.g.v1.1 Splicing factor 3B subunit
orange1.1g048367m.g.v1.1 Splicing factor 3B subunit
Regulatory gene
orange1.1g002213m.g.v1.1 Tesmin/TSO1-like CXC domain
orange1.1g003968m.g.v1.1 tesmin tso1-like cxc
orange1.1g006081m.g.v1.1 Protein tesmin TSO1-like CXC

Load All Networks

Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.