Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
orange1.1g040944m.g.v1.1
View in Genome Browser
Position
scaffold06723:672-3125 (-)
2453bp
Gene Type
gene
Gene Description (Protein Product)
protein serine/threonine kinase activity
Organism
Citrus sinensis
Also AS AT3G51270CICLE_v10008180mg

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
orange1.1g043057m.g.v1.1 ribosome biogenesis protein
orange1.1g045705m.g.v1.1 ribosome biogenesis protein
orange1.1g048066m.g.v1.1 ribosome biogenesis protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) BP
GO:0002119 nematode larval development BP
GO:0002164 larval development BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004672 protein kinase activity MF
GO:0004674 protein serine/threonine kinase activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0005737 cytoplasm CC
GO:0005829 cytosol CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006364 rRNA processing BP
GO:0006396 RNA processing BP
GO:0006464 protein modification process BP
GO:0006468 protein phosphorylation BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006793 phosphorus metabolic process BP
GO:0006796 phosphate-containing compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0007088 regulation of mitotic nuclear division BP
GO:0007275 multicellular organism development BP
GO:0007346 regulation of mitotic cell cycle BP
GO:0007399 nervous system development BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008284 positive regulation of cell population proliferation BP
GO:0009791 post-embryonic development BP
GO:0009893 positive regulation of metabolic process BP
GO:0009987 cellular process BP
GO:0010467 gene expression BP
GO:0010468 regulation of gene expression BP
GO:0010494 cytoplasmic stress granule CC
GO:0010564 regulation of cell cycle process BP
GO:0010604 positive regulation of macromolecule metabolic process BP
GO:0010628 positive regulation of gene expression BP
GO:0010720 positive regulation of cell development BP
GO:0010965 regulation of mitotic sister chromatid separation BP
GO:0014013 regulation of gliogenesis BP
GO:0014015 positive regulation of gliogenesis BP
GO:0016070 RNA metabolic process BP
GO:0016072 rRNA metabolic process BP
GO:0016301 kinase activity MF
GO:0016310 phosphorylation BP
GO:0016740 transferase activity MF
GO:0016772 transferase activity, transferring phosphorus-containing groups MF
GO:0016773 phosphotransferase activity, alcohol group as acceptor MF
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019538 protein metabolic process BP
GO:0022008 neurogenesis BP
GO:0022613 ribonucleoprotein complex biogenesis BP
GO:0030071 regulation of mitotic metaphase/anaphase transition BP
GO:0030154 cell differentiation BP
GO:0030490 maturation of SSU-rRNA BP
GO:0030684 preribosome CC
GO:0030688 preribosome, small subunit precursor CC
GO:0031323 regulation of cellular metabolic process BP
GO:0031325 positive regulation of cellular metabolic process BP
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032239 regulation of nucleobase-containing compound transport BP
GO:0032241 positive regulation of nucleobase-containing compound transport BP
GO:0032386 regulation of intracellular transport BP
GO:0032388 positive regulation of intracellular transport BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032879 regulation of localization BP
GO:0032880 regulation of protein localization BP
GO:0032991 protein-containing complex CC
GO:0033043 regulation of organelle organization BP
GO:0033044 regulation of chromosome organization BP
GO:0033045 regulation of sister chromatid segregation BP
GO:0033047 regulation of mitotic sister chromatid segregation BP
GO:0033157 regulation of intracellular protein transport BP
GO:0034470 ncRNA processing BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034660 ncRNA metabolic process BP
GO:0035770 ribonucleoprotein granule CC
GO:0036211 protein modification process BP
GO:0036464 cytoplasmic ribonucleoprotein granule CC
GO:0042127 regulation of cell population proliferation BP
GO:0042254 ribosome biogenesis BP
GO:0042274 ribosomal small subunit biogenesis BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043412 macromolecule modification BP
GO:0044085 cellular component biogenesis BP
GO:0044087 regulation of cellular component biogenesis BP
GO:0044089 positive regulation of cellular component biogenesis BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0045595 regulation of cell differentiation BP
GO:0045597 positive regulation of cell differentiation BP
GO:0045935 positive regulation of nucleobase-containing compound metabolic process BP
GO:0046483 heterocycle metabolic process BP
GO:0046777 protein autophosphorylation BP
GO:0046822 regulation of nucleocytoplasmic transport BP
GO:0046824 positive regulation of nucleocytoplasmic transport BP
GO:0046825 regulation of protein export from nucleus BP
GO:0046827 positive regulation of protein export from nucleus BP
GO:0046828 regulation of RNA import into nucleus BP
GO:0046830 positive regulation of RNA import into nucleus BP
GO:0046831 regulation of RNA export from nucleus BP
GO:0046833 positive regulation of RNA export from nucleus BP
GO:0048518 positive regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048699 generation of neurons BP
GO:0048731 system development BP
GO:0048856 anatomical structure development BP
GO:0048869 cellular developmental process BP
GO:0050767 regulation of neurogenesis BP
GO:0050769 positive regulation of neurogenesis BP
GO:0050789 regulation of biological process BP
GO:0050793 regulation of developmental process BP
GO:0050794 regulation of cellular process BP
GO:0051049 regulation of transport BP
GO:0051050 positive regulation of transport BP
GO:0051094 positive regulation of developmental process BP
GO:0051128 regulation of cellular component organization BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051173 positive regulation of nitrogen compound metabolic process BP
GO:0051222 positive regulation of protein transport BP
GO:0051223 regulation of protein transport BP
GO:0051239 regulation of multicellular organismal process BP
GO:0051240 positive regulation of multicellular organismal process BP
GO:0051252 regulation of RNA metabolic process BP
GO:0051254 positive regulation of RNA metabolic process BP
GO:0051726 regulation of cell cycle BP
GO:0051783 regulation of nuclear division BP
GO:0051960 regulation of nervous system development BP
GO:0051962 positive regulation of nervous system development BP
GO:0051983 regulation of chromosome segregation BP
GO:0060251 regulation of glial cell proliferation BP
GO:0060252 positive regulation of glial cell proliferation BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0060284 regulation of cell development BP
GO:0060341 regulation of cellular localization BP
GO:0065007 biological regulation BP
GO:0070013 intracellular organelle lumen CC
GO:0070201 regulation of establishment of protein localization BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0080090 regulation of primary metabolic process BP
GO:0090069 regulation of ribosome biogenesis BP
GO:0090070 positive regulation of ribosome biogenesis BP
GO:0090087 regulation of peptide transport BP
GO:0090304 nucleic acid metabolic process BP
GO:0090316 positive regulation of intracellular protein transport BP
GO:0140096 catalytic activity, acting on a protein MF
GO:1901360 organic cyclic compound metabolic process BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901987 regulation of cell cycle phase transition BP
GO:1901990 regulation of mitotic cell cycle phase transition BP
GO:1902099 regulation of metaphase/anaphase transition of cell cycle BP
GO:1903827 regulation of protein localization BP
GO:1903829 positive regulation of protein localization BP
GO:1904951 positive regulation of establishment of protein localization BP
GO:1905818 regulation of chromosome separation BP
GO:1990904 ribonucleoprotein complex CC
GO:2000026 regulation of multicellular organismal development BP
GO:2000197 regulation of ribonucleoprotein complex localization BP
GO:2000199 positive regulation of ribonucleoprotein complex localization BP
GO:2000200 regulation of ribosomal subunit export from nucleus BP
GO:2000202 positive regulation of ribosomal subunit export from nucleus BP
GO:2000206 regulation of ribosomal small subunit export from nucleus BP
GO:2000208 positive regulation of ribosomal small subunit export from nucleus BP
GO:2000232 regulation of rRNA processing BP
GO:2000234 positive regulation of rRNA processing BP
KEGG Term Name Description
map03008 Ribosome biogenesis in eukaryotes Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.